RNA–Protein interactions for RNA: YKR092C

SRP40, Transcript of Nucleolar serine-rich protein, yeast

Gene SRP40, Length 1,221 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP40	YKR092C	SFP1	P32432	683 aa		4.56	□□□□□ -1.68
SRP40	YKR092C	PRS1	P32895	427 aa	Known RBP	4.56	□□□□□ -1.68
SRP40	YKR092C	MTC2	P34246	357 aa		4.56	□□□□□ -1.68
SRP40	YKR092C	SAP190	P36123	1033 aa		4.56	□□□□□ -1.68
SRP40	YKR092C	URM1	P40554	99 aa	Predicted RBP	4.56	□□□□□ -1.68
SRP40	YKR092C	CHA4	P43634	648 aa		4.56	□□□□□ -1.68
SRP40	YKR092C	TAN1	P53072	289 aa	Predicted RBP	4.56	□□□□□ -1.68
SRP40	YKR092C	HOS2	P53096	452 aa	Predicted RBP	4.56	□□□□□ -1.68
SRP40	YKR092C	YAP6	Q03935	383 aa		4.56	□□□□□ -1.68
SRP40	YKR092C	LRS4	Q04087	347 aa	Known RBP	4.56	□□□□□ -1.68
SRP40	YKR092C	YDL121C	Q07541	149 aa		4.56	□□□□□ -1.68
SRP40	YKR092C	WHI4	Q07655	649 aa	Known RBP	4.56	□□□□□ -1.68
SRP40	YKR092C	NOP12	Q08208	459 aa	Known RBP	4.56	□□□□□ -1.68
SRP40	YKR092C	PDR10	P51533	1564 aa		4.56	□□□□□ -1.68
SRP40	YKR092C	TY2B-LR1	P0C2J3	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-F	P0CX63	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-GR2	P0CX64	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-C	P25384	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-DR2	Q03494	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY1B-DR1	Q03855	1755 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-DR3	Q07791	1770 aa	Known RBP	4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-OR1	Q12113	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-DR1	Q12472	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TY2B-OR2	Q12501	1770 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	PRC1	P00729	532 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	SED4	P25365	1065 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	LTV1	P34078	463 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	STO1	P34160	861 aa	Known RBP	4.55	□□□□□ -1.68
SRP40	YKR092C	MPE1	P35728	441 aa	Known RBP	4.55	□□□□□ -1.68
SRP40	YKR092C	ERP2	P39704	215 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TPM2	P40414	161 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	RLP7	P40693	322 aa	Known RBP	4.55	□□□□□ -1.68
SRP40	YKR092C	CAF16	P43569	289 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	TFB2	Q02939	513 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	YLR224W	Q05947	369 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	ETT1	Q08421	412 aa	Known RBP	4.55	□□□□□ -1.68
SRP40	YKR092C	YOR022C	Q12204	715 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	SNT2	P53127	1403 aa		4.55	□□□□□ -1.68
SRP40	YKR092C	FBP1	P09201	348 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	MCD4	P36051	919 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	FAF1	P40546	346 aa	Predicted RBP	4.54	□□□□□ -1.68
SRP40	YKR092C	SHR5	P41912	237 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	ALY2	P47029	1046 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	DNM1	P54861	757 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	UPC2	Q12151	913 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	HSP42	Q12329	375 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	VTH1	P40438	1549 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	VTH2	P40890	1549 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	NUP159	P40477	1460 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	CAT8	P39113	1433 aa		4.54	□□□□□ -1.68
SRP40	YKR092C	YLR358C	O13565	187 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	DIF1	O13577	133 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	SRD1	P09007	221 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	RPL8A	P17076	256 aa	Known RBP	4.53	□□□□□ -1.68
SRP40	YKR092C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
SRP40	YKR092C	OPI1	P21957	404 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	MUM2	P38236	366 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	SET5	P38890	526 aa	Known RBP	4.53	□□□□□ -1.68
SRP40	YKR092C	PLB1	P39105	664 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	NCS6	P53088	359 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	CLU1	Q03690	1277 aa	Known RBP	4.53	□□□□□ -1.68
SRP40	YKR092C	HAL9	Q12180	1030 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	CLF1	Q12309	687 aa	Predicted RBP	4.53	□□□□□ -1.68
SRP40	YKR092C	YGR161W-C	Q3E744	92 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	YBR182C-A	Q8TGU6	64 aa		4.53	□□□□□ -1.68
SRP40	YKR092C	DNF1	P32660	1571 aa		4.53	□□□□□ -1.69
SRP40	YKR092C	ADR1	P07248	1323 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	RAD18	P10862	487 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	DPB3	P27344	201 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	RPN10	P38886	268 aa	Known RBP	4.52	□□□□□ -1.69
SRP40	YKR092C	SDP1	P40479	209 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	HXT16	P47185	567 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	DUS1	P53759	423 aa	Known RBP	4.52	□□□□□ -1.69
SRP40	YKR092C	YNL193W	P53870	558 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	RIA1	P53893	1110 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	PRP3	Q03338	469 aa	Predicted RBP	4.52	□□□□□ -1.69
SRP40	YKR092C	COG8	Q04632	607 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	ERP4	Q12450	207 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	NKP1	Q12493	238 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	TY2B-B	Q12491	1770 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	MHP1	P43638	1398 aa		4.52	□□□□□ -1.69
SRP40	YKR092C	TY1B-A	O13527	1196 aa	Known RBP	4.51	□□□□□ -1.69
SRP40	YKR092C	RAD51	P25454	400 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	STE14	P32584	239 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	LST4	P34239	828 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	SHM2	P37291	469 aa	Known RBP	4.51	□□□□□ -1.69
SRP40	YKR092C	CTF8	P38877	133 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	PMC1	P38929	1173 aa	Predicted RBP	4.51	□□□□□ -1.69
SRP40	YKR092C	YJR142W	P47173	342 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	SNP1	Q00916	300 aa	Predicted RBP	4.51	□□□□□ -1.69
SRP40	YKR092C	CRR1	Q05790	422 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	GLE1	Q12315	538 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	SRB8	P25648	1427 aa		4.51	□□□□□ -1.69
SRP40	YKR092C	SAC3	P46674	1301 aa		4.5	□□□□□ -1.69
SRP40	YKR092C	YLR419W	Q06698	1435 aa	Known RBP	4.5	□□□□□ -1.69
SRP40	YKR092C	CTS1	P29029	562 aa		4.5	□□□□□ -1.69
SRP40	YKR092C	HOG1	P32485	435 aa		4.5	□□□□□ -1.69
SRP40	YKR092C	YEL1	P34225	687 aa		4.5	□□□□□ -1.69
SRP40	YKR092C	PIM1	P36775	1133 aa		4.5	□□□□□ -1.69
SRP40	YKR092C	YHR078W	P38799	552 aa		4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 58.6 ms