RNA–Protein interactions for RNA: YPL211W

NIP7, Transcript of Nucleolar protein required for 60S ribosome subunit biogenesis, yeast

Gene NIP7, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP7	YPL211W	YAP3	P38749	330 aa		4.66	□□□□□ -1.66
NIP7	YPL211W	LCD1	Q04377	747 aa		4.66	□□□□□ -1.66
NIP7	YPL211W	SSL1	Q04673	461 aa	Predicted RBP	4.66	□□□□□ -1.66
NIP7	YPL211W	PDR5	P33302	1511 aa	Known RBP	4.66	□□□□□ -1.66
NIP7	YPL211W	TUB2	P02557	457 aa	Known RBP	4.65	□□□□□ -1.67
NIP7	YPL211W	MSD1	P15179	658 aa	Known RBP	4.65	□□□□□ -1.67
NIP7	YPL211W	HSP60	P19882	572 aa	Known RBP	4.65	□□□□□ -1.67
NIP7	YPL211W	CDC11	P32458	415 aa		4.65	□□□□□ -1.67
NIP7	YPL211W	HUL5	P53119	910 aa		4.65	□□□□□ -1.67
NIP7	YPL211W	URN1	Q06525	465 aa	Known RBP	4.65	□□□□□ -1.67
NIP7	YPL211W	NPC2	Q12408	173 aa		4.65	□□□□□ -1.67
NIP7	YPL211W	IML1	P47170	1584 aa		4.65	□□□□□ -1.67
NIP7	YPL211W	RFA1	P22336	621 aa	Known RBP	4.64	□□□□□ -1.67
NIP7	YPL211W	REC104	P33323	182 aa		4.64	□□□□□ -1.67
NIP7	YPL211W	YBR238C	P38330	731 aa	Known RBP	4.64	□□□□□ -1.67
NIP7	YPL211W	CCM1	P48237	864 aa	Predicted RBP	4.64	□□□□□ -1.67
NIP7	YPL211W	NCS6	P53088	359 aa		4.64	□□□□□ -1.67
NIP7	YPL211W	HAP1	P0CE41	1502 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	CIT1	P00890	479 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	RPP2A	P05319	106 aa	Known RBP	4.63	□□□□□ -1.67
NIP7	YPL211W	STE13	P33894	931 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	ATG19	P35193	415 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	PET10	P36139	283 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	YHR020W	P38708	688 aa	Known RBP	4.63	□□□□□ -1.67
NIP7	YPL211W	URM1	P40554	99 aa	Predicted RBP	4.63	□□□□□ -1.67
NIP7	YPL211W	CEP3	P40969	608 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	RIP-Chip
NIP7	YPL211W	FLC1	Q08967	793 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	UPC2	Q12151	913 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	NTO1	Q12311	748 aa		4.63	□□□□□ -1.67
NIP7	YPL211W	CAD1	P24813	409 aa	Known RBP	4.62	□□□□□ -1.67
NIP7	YPL211W	SED4	P25365	1065 aa		4.62	□□□□□ -1.67
NIP7	YPL211W	DCG1	P32460	244 aa		4.62	□□□□□ -1.67
NIP7	YPL211W	TRM2	P33753	639 aa		4.62	□□□□□ -1.67
NIP7	YPL211W	YIL108W	P40483	696 aa	Known RBP	4.62	□□□□□ -1.67
NIP7	YPL211W	EXG2	P52911	562 aa		4.62	□□□□□ -1.67
NIP7	YPL211W	PMA1	P05030	918 aa	Known RBP	4.61	□□□□□ -1.67
NIP7	YPL211W	HUL4	P40985	892 aa		4.61	□□□□□ -1.67
NIP7	YPL211W	YJL049W	P47048	450 aa		4.61	□□□□□ -1.67
NIP7	YPL211W	SUN4	P53616	420 aa		4.61	□□□□□ -1.67
NIP7	YPL211W	VPS30	Q02948	557 aa		4.61	□□□□□ -1.67
NIP7	YPL211W	BDF2	Q07442	638 aa		4.61	□□□□□ -1.67
NIP7	YPL211W	YDL124W	Q07551	312 aa	Known RBP	4.61	□□□□□ -1.67
NIP7	YPL211W	CDC53	Q12018	815 aa	Known RBP	4.61	□□□□□ -1.67
NIP7	YPL211W	PFK1	P16861	987 aa	Known RBP	4.6	□□□□□ -1.67
NIP7	YPL211W	KAR4	P25583	335 aa		4.6	□□□□□ -1.67
NIP7	YPL211W	URA1	P28272	314 aa	Predicted RBP	4.6	□□□□□ -1.67
NIP7	YPL211W	BET3	P36149	193 aa		4.6	□□□□□ -1.67
NIP7	YPL211W	RSP5	P39940	809 aa	Known RBP	4.6	□□□□□ -1.67
NIP7	YPL211W	IOC3	P43596	787 aa		4.6	□□□□□ -1.67
NIP7	YPL211W	TAF8	Q03750	510 aa		4.6	□□□□□ -1.67
NIP7	YPL211W	ENV7	Q12003	364 aa		4.6	□□□□□ -1.67
NIP7	YPL211W	LAS17	Q12446	633 aa		4.6	□□□□□ -1.67
NIP7	YPL211W	RPS9A	O13516	197 aa	Known RBP	4.59	□□□□□ -1.67
NIP7	YPL211W	TOM70	P07213	617 aa	Known RBP	4.59	□□□□□ -1.67
NIP7	YPL211W	USO1	P25386	1790 aa		4.59	□□□□□ -1.67
NIP7	YPL211W	STE14	P32584	239 aa		4.59	□□□□□ -1.67
NIP7	YPL211W	TYE7	P33122	291 aa	Predicted RBP	4.59	□□□□□ -1.67
NIP7	YPL211W	TYS1	P36421	394 aa	Known RBP	4.59	□□□□□ -1.67
NIP7	YPL211W	PDR11	P40550	1411 aa		4.59	□□□□□ -1.67
NIP7	YPL211W	UBP6	P43593	499 aa	Known RBP	4.59	□□□□□ -1.67
NIP7	YPL211W	NNF1	P47149	201 aa		4.59	□□□□□ -1.67
NIP7	YPL211W	RTA1	P53047	317 aa		4.59	□□□□□ -1.67
NIP7	YPL211W	HDA1	P53973	706 aa		4.59	□□□□□ -1.67
NIP7	YPL211W	YKR011C	Q02209	353 aa		4.59	□□□□□ -1.67
NIP7	YPL211W	MSS4	P38994	779 aa		4.58	□□□□□ -1.68
NIP7	YPL211W	MSE1	P48525	536 aa		4.58	□□□□□ -1.68
NIP7	YPL211W	KIN4	Q01919	800 aa		4.58	□□□□□ -1.68
NIP7	YPL211W	MAK10	Q02197	733 aa		4.58	□□□□□ -1.68
NIP7	YPL211W	GSF2	Q04697	403 aa	Known RBP	4.58	□□□□□ -1.68
NIP7	YPL211W	NSE3	Q05541	303 aa		4.58	□□□□□ -1.68
NIP7	YPL211W	PUS9	Q12069	462 aa		4.58	□□□□□ -1.68
NIP7	YPL211W	CAN1	P04817	590 aa		4.57	□□□□□ -1.68
NIP7	YPL211W	MPH2	P0CD99	609 aa		4.57	□□□□□ -1.68
NIP7	YPL211W	HRR25	P29295	494 aa	Known RBP	4.57	□□□□□ -1.68
NIP7	YPL211W	PMI40	P29952	429 aa	Known RBP	4.57	□□□□□ -1.68
NIP7	YPL211W	DEF1	P35732	738 aa	Known RBP	4.57	□□□□□ -1.68
NIP7	YPL211W	AIM21	P40563	679 aa		4.57	□□□□□ -1.68
NIP7	YPL211W	GYP8	P43570	497 aa		4.57	□□□□□ -1.68
NIP7	YPL211W	SLU7	Q02775	382 aa	Known RBP	4.57	□□□□□ -1.68
NIP7	YPL211W	RAV1	P47104	1357 aa		4.56	□□□□□ -1.68
NIP7	YPL211W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.56	□□□□□ -1.68
NIP7	YPL211W	FBP1	P09201	348 aa		4.56	□□□□□ -1.68
NIP7	YPL211W	PAF1	P38351	445 aa		4.56	□□□□□ -1.68
NIP7	YPL211W	SDP1	P40479	209 aa		4.56	□□□□□ -1.68
NIP7	YPL211W	PUS2	P53167	370 aa		4.56	□□□□□ -1.68
NIP7	YPL211W	PNS1	Q12412	539 aa		4.56	□□□□□ -1.68
NIP7	YPL211W	YOL098C	Q12496	1037 aa		4.56	□□□□□ -1.68
NIP7	YPL211W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	RIP-Chip
NIP7	YPL211W	DAL7	P21826	554 aa		4.55	□□□□□ -1.68
NIP7	YPL211W	CYS3	P31373	394 aa	Known RBP	4.55	□□□□□ -1.68
NIP7	YPL211W	SEC21	P32074	935 aa	Known RBP	4.55	□□□□□ -1.68
NIP7	YPL211W	SRP40	P32583	406 aa	Predicted RBP	4.55	□□□□□ -1.68
NIP7	YPL211W	NIT3	P49954	291 aa		4.55	□□□□□ -1.68
NIP7	YPL211W	AIM39	Q08223	395 aa		4.55	□□□□□ -1.68
NIP7	YPL211W	ENB1	Q08299	606 aa		4.55	□□□□□ -1.68
NIP7	YPL211W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
NIP7	YPL211W	GAL11	P19659	1081 aa		4.54	□□□□□ -1.68
NIP7	YPL211W	YCL002C	P25565	263 aa		4.54	□□□□□ -1.68
NIP7	YPL211W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 59.7 ms