RNA–Protein interactions for RNA: YNL189W

SRP1, Transcript of Karyopherin alpha homolog, yeast

Gene SRP1, Length 1,629 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP1	YNL189W	CTF8	P38877	133 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	SET5	P38890	526 aa	Known RBP	4.39	□□□□□ -1.71
SRP1	YNL189W	MSS4	P38994	779 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	UBP12	P39538	1254 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	SHR5	P41912	237 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	NCS6	P53088	359 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	SDA1	P53313	767 aa	Known RBP	4.39	□□□□□ -1.71
SRP1	YNL189W	SLU7	Q02775	382 aa	Known RBP	4.39	□□□□□ -1.71
SRP1	YNL189W	ATG33	Q06485	197 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	THI73	Q07904	523 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	THI21	Q08975	551 aa		4.39	□□□□□ -1.71
SRP1	YNL189W	PRP4	P20053	465 aa	Known RBP	4.38	□□□□□ -1.71
SRP1	YNL189W	GRX4	P32642	244 aa		4.38	□□□□□ -1.71
SRP1	YNL189W	MGS1	P40151	587 aa		4.38	□□□□□ -1.71
SRP1	YNL189W	YLR224W	Q05947	369 aa		4.38	□□□□□ -1.71
SRP1	YNL189W	PRP6	P19735	899 aa	Predicted RBP	4.37	□□□□□ -1.71
SRP1	YNL189W	SED4	P25365	1065 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	YEN1	P40028	759 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	IRC24	P40580	263 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	SSY5	P47002	699 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	ZIP2	P53061	704 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	GPG1	P53130	126 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	RIM8	P53179	542 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	NPC2	Q12408	173 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	KCS1	Q12494	1050 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	YLR149C	Q99296	730 aa		4.37	□□□□□ -1.71
SRP1	YNL189W	SEC21	P32074	935 aa	Known RBP	4.36	□□□□□ -1.71
SRP1	YNL189W	LST4	P34239	828 aa		4.36	□□□□□ -1.71
SRP1	YNL189W	YKR051W	P36142	418 aa		4.36	□□□□□ -1.71
SRP1	YNL189W	YHR078W	P38799	552 aa		4.36	□□□□□ -1.71
SRP1	YNL189W	PRP43	P53131	767 aa	Known RBP	4.36	□□□□□ -1.71
SRP1	YNL189W	NHX1	Q04121	633 aa		4.36	□□□□□ -1.71
SRP1	YNL189W	TUB3	P09734	445 aa	Known RBP	4.35	□□□□□ -1.71
SRP1	YNL189W	ATG19	P35193	415 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	TYS1	P36421	394 aa	Known RBP	4.35	□□□□□ -1.71
SRP1	YNL189W	RPN10	P38886	268 aa	Known RBP	4.35	□□□□□ -1.71
SRP1	YNL189W	SAK1	P38990	1142 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	NIT1	P40447	199 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	TMA10	Q06177	86 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	NOP12	Q08208	459 aa	Known RBP	4.35	□□□□□ -1.71
SRP1	YNL189W	GUP2	Q08929	609 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	GIN4	Q12263	1142 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	ELM1	P32801	640 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	YEL1	P34225	687 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	NPY1	P53164	384 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	UME1	Q03010	460 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	GPR1	Q12361	961 aa		4.35	□□□□□ -1.71
SRP1	YNL189W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected
SRP1	YNL189W	VHR1	P40522	640 aa		4.34	□□□□□ -1.71
SRP1	YNL189W	YJR096W	P47137	282 aa		4.34	□□□□□ -1.71
SRP1	YNL189W	YGR237C	P50089	785 aa		4.34	□□□□□ -1.71
SRP1	YNL189W	MUS81	Q04149	632 aa	Predicted RBP	4.34	□□□□□ -1.71
SRP1	YNL189W	GUD1	Q07729	489 aa		4.34	□□□□□ -1.71
SRP1	YNL189W	LAS17	Q12446	633 aa		4.34	□□□□□ -1.71
SRP1	YNL189W	NUP145	P49687	1317 aa		4.33	□□□□□ -1.72
SRP1	YNL189W	KAR4	P25583	335 aa		4.33	□□□□□ -1.72
SRP1	YNL189W	CCR4	P31384	837 aa	Known RBP	4.33	□□□□□ -1.72
SRP1	YNL189W	FLR1	P38124	548 aa		4.33	□□□□□ -1.72
SRP1	YNL189W	HSL7	P38274	827 aa		4.33	□□□□□ -1.72
SRP1	YNL189W	PFA3	P42836	336 aa		4.33	□□□□□ -1.72
SRP1	YNL189W	YFL052W	P43551	465 aa		4.33	□□□□□ -1.72
SRP1	YNL189W	BNA2	P47125	453 aa		4.33	□□□□□ -1.72
SRP1	YNL189W	MTQ2	Q03920	221 aa	Predicted RBP	4.33	□□□□□ -1.72
SRP1	YNL189W	PMT3	P47190	753 aa		4.32	□□□□□ -1.72
SRP1	YNL189W	MRPS35	P53292	345 aa		4.32	□□□□□ -1.72
SRP1	YNL189W	ARP4	P80428	489 aa		4.32	□□□□□ -1.72
SRP1	YNL189W	LEE1	Q02799	301 aa	Known RBP	4.32	□□□□□ -1.72
SRP1	YNL189W	RPN7	Q06103	429 aa	Known RBP	4.32	□□□□□ -1.72
SRP1	YNL189W	PRP19	P32523	503 aa	Known RBP	4.32	□□□□□ -1.72
SRP1	YNL189W	MNN4	P36044	1178 aa		4.32	□□□□□ -1.72
SRP1	YNL189W	DOT6	P40059	670 aa	Known RBP	4.32	□□□□□ -1.72
SRP1	YNL189W	GPP1	P41277	250 aa	Known RBP	4.32	□□□□□ -1.72
SRP1	YNL189W	ASI2	P53895	289 aa		4.32	□□□□□ -1.72
SRP1	YNL189W	CAD1	P24813	409 aa	Known RBP	4.31	□□□□□ -1.72
SRP1	YNL189W	PZF1	P39933	429 aa		4.31	□□□□□ -1.72
SRP1	YNL189W	MTR3	P48240	250 aa	Predicted RBP	4.31	□□□□□ -1.72
SRP1	YNL189W	EXG2	P52911	562 aa		4.31	□□□□□ -1.72
SRP1	YNL189W	MCM6	P53091	1017 aa	Known RBP	4.31	□□□□□ -1.72
SRP1	YNL189W	COG8	Q04632	607 aa		4.31	□□□□□ -1.72
SRP1	YNL189W	PEX19	Q07418	342 aa		4.31	□□□□□ -1.72
SRP1	YNL189W	CKB2	P38930	258 aa		4.3	□□□□□ -1.72
SRP1	YNL189W	YJR120W	P47157	116 aa		4.3	□□□□□ -1.72
SRP1	YNL189W	IOC4	Q04213	475 aa		4.3	□□□□□ -1.72
SRP1	YNL189W	FAP7	Q12055	197 aa	Predicted RBP	4.3	□□□□□ -1.72
SRP1	YNL189W	SWM1	Q12379	170 aa		4.3	□□□□□ -1.72
SRP1	YNL189W	YLR358C	O13565	187 aa		4.29	□□□□□ -1.72
SRP1	YNL189W	RPP2A	P05319	106 aa	Known RBP	4.29	□□□□□ -1.72
SRP1	YNL189W	UBP5	P39944	805 aa		4.29	□□□□□ -1.72
SRP1	YNL189W	YGL081W	P53156	320 aa		4.29	□□□□□ -1.72
SRP1	YNL189W	DCS2	Q12123	353 aa		4.29	□□□□□ -1.72
SRP1	YNL189W	YLR415C	O13578	112 aa		4.28	□□□□□ -1.72
SRP1	YNL189W	YKR018C	P36114	725 aa		4.28	□□□□□ -1.72
SRP1	YNL189W	TAF1	P46677	1066 aa		4.28	□□□□□ -1.72
SRP1	YNL189W	PHO23	P50947	330 aa		4.28	□□□□□ -1.72
SRP1	YNL189W	ERG5	P54781	538 aa		4.28	□□□□□ -1.72
SRP1	YNL189W	CLU1	Q03690	1277 aa	Known RBP	4.28	□□□□□ -1.72
SRP1	YNL189W	TMA17	Q12513	150 aa		4.28	□□□□□ -1.72
SRP1	YNL189W	CTF13	P35203	478 aa		4.28	□□□□□ -1.72
SRP1	YNL189W	MIP6	P38760	659 aa	Known RBP	4.28	□□□□□ -1.72
SRP1	YNL189W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.28	□□□□□ -1.72	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 138.2 ms