RNA–Protein interactions for RNA: YJL197W

UBP12, Transcript of Ubiquitin-specific protease, yeast

Gene UBP12, Length 3,765 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP12	YJL197W	PTK2	P47116	818 aa	Known RBP	4.23	□□□□□ -1.73
UBP12	YJL197W	EIS1	Q05050	843 aa	Known RBP	4.23	□□□□□ -1.73
UBP12	YJL197W	HRQ1	Q05549	1077 aa		4.23	□□□□□ -1.73
UBP12	YJL197W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
UBP12	YJL197W	HOM3	P10869	527 aa		4.23	□□□□□ -1.73
UBP12	YJL197W	FUN30	P31380	1131 aa		4.23	□□□□□ -1.73
UBP12	YJL197W	YKL151C	P36059	337 aa		4.23	□□□□□ -1.73
UBP12	YJL197W	RSA3	Q05942	220 aa	Known RBP	4.23	□□□□□ -1.73
UBP12	YJL197W	DAL5	P15365	543 aa		4.23	□□□□□ -1.73
UBP12	YJL197W	CDC60	P26637	1090 aa	Known RBP	4.23	□□□□□ -1.73
UBP12	YJL197W	RPT3	P33298	428 aa	Known RBP	4.23	□□□□□ -1.73
UBP12	YJL197W	HST3	P53687	447 aa		4.23	□□□□□ -1.73
UBP12	YJL197W	AVO1	Q08236	1176 aa		4.23	□□□□□ -1.73
UBP12	YJL197W	SEM1	O94742	89 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	MTF2	P10849	440 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	SEC18	P18759	758 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	CMK1	P27466	446 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	RPC82	P32349	654 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	DLD1	P32891	587 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	SER1	P33330	395 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	MSC7	P38694	644 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	YER158C	P40095	573 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	KIP1	P28742	1111 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	UPF3	P48412	387 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	BI4	P03879	638 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	NAM7	P30771	971 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	VMA8	P32610	256 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	ANP1	P32629	500 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	PRK1	P40494	810 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	RLP7	P40693	322 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	SMK1	P41808	388 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	YML6	P51998	286 aa		4.22	□□□□□ -1.73
UBP12	YJL197W	NBA1	Q08229	501 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	RPS21B	Q3E754	87 aa	Known RBP	4.22	□□□□□ -1.73
UBP12	YJL197W	NMD3	P38861	518 aa	Known RBP	4.21	□□□□□ -1.74
UBP12	YJL197W	MXR1	P40029	184 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	RIC1	P40395	1056 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	IRC6	P43615	237 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	YLR287C	Q05881	355 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	HIM1	Q06674	414 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	PSF3	Q12146	194 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	CDC19	P00549	500 aa	Known RBP	4.21	□□□□□ -1.74
UBP12	YJL197W	SAN1	P22470	610 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	PHO3	P24031	467 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	YCL049C	P25577	312 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	VRP1	P37370	817 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	MDM38	Q08179	573 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	YPL277C	Q08989	487 aa		4.21	□□□□□ -1.74
UBP12	YJL197W	MDL2	P33311	773 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	SLC1	P33333	303 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	CCZ1	P38273	704 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	SSP120	P39931	234 aa	Known RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	MRPL13	Q02204	264 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	HRK1	Q08732	759 aa	Known RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	ENT1	Q12518	454 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	DIF1	O13577	133 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	PGS1	P25578	521 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	SEC65	P29478	273 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	BFA1	P47113	574 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	TAD1	P53065	400 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	RBG2	P53295	368 aa	Known RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	ARC35	P53731	342 aa	Known RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	KRR1	P25586	316 aa	Predicted RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	RAD16	P31244	790 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	YKL100C	P34248	587 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	UGA2	P38067	497 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	SRP68	P38687	599 aa	Known RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	YIL092W	P40497	633 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	UBC9	P50623	157 aa	Predicted RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	YGR045C	P53229	120 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	NUR1	Q12066	484 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	AIR2	Q12476	344 aa	Known RBP	4.2	□□□□□ -1.74
UBP12	YJL197W	YBR182C-A	Q8TGU6	64 aa		4.2	□□□□□ -1.74
UBP12	YJL197W	YKR018C	P36114	725 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	APM3	P38153	483 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	CAJ1	P39101	391 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	ARA2	Q04212	335 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	RLP24	Q07915	199 aa	Known RBP	4.19	□□□□□ -1.74
UBP12	YJL197W	SLP1	Q12232	587 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	SWI6	P09959	803 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	TPM1	P17536	199 aa	Known RBP	4.19	□□□□□ -1.74
UBP12	YJL197W	FUR1	P18562	216 aa	Known RBP	4.19	□□□□□ -1.74
UBP12	YJL197W	SAS3	P34218	831 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	FAT1	P38225	669 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	SPC72	P39723	622 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	TAF11	Q04226	346 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	OMS1	Q06668	471 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	MRP10	O75012	95 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	LEU2	P04173	364 aa	Predicted RBP	4.19	□□□□□ -1.74
UBP12	YJL197W	UBC1	P21734	215 aa	Known RBP	4.19	□□□□□ -1.74
UBP12	YJL197W	DAL7	P21826	554 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	AMS1	P22855	1083 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	CYS3	P31373	394 aa	Known RBP	4.19	□□□□□ -1.74
UBP12	YJL197W	ASH1	P34233	588 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	TAF5	P38129	798 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	GIC1	P38785	314 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	STL1	P39932	569 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	RRT14	P40470	206 aa		4.19	□□□□□ -1.74
UBP12	YJL197W	ENP2	P48234	707 aa	Known RBP	4.19	□□□□□ -1.74
UBP12	YJL197W	YGR016W	P53209	190 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 74.1 ms