RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	NKP1	Q12493	238 aa		5.77	□□□□□ -1.49
DEG1	YFL001W	CYS3	P31373	394 aa	Known RBP	5.76	□□□□□ -1.49
DEG1	YFL001W	STE13	P33894	931 aa		5.76	□□□□□ -1.49
DEG1	YFL001W	SET5	P38890	526 aa	Known RBP	5.76	□□□□□ -1.49
DEG1	YFL001W	HXT6	P39003	570 aa	Known RBP	5.76	□□□□□ -1.49
DEG1	YFL001W	HXT7	P39004	570 aa		5.76	□□□□□ -1.49
DEG1	YFL001W	SKY1	Q03656	742 aa		5.76	□□□□□ -1.49
DEG1	YFL001W	MLC2	Q06580	163 aa		5.76	□□□□□ -1.49
DEG1	YFL001W	YOR059C	Q08448	450 aa	Known RBP	5.76	□□□□□ -1.49
DEG1	YFL001W	APM4	Q99186	491 aa		5.76	□□□□□ -1.49
DEG1	YFL001W	KCC4	P25389	1037 aa		5.75	□□□□□ -1.49
DEG1	YFL001W	WHI3	P34761	661 aa	Known RBP	5.75	□□□□□ -1.49
DEG1	YFL001W	YKL133C	P36066	463 aa		5.75	□□□□□ -1.49
DEG1	YFL001W	CIT3	P43635	486 aa		5.75	□□□□□ -1.49
DEG1	YFL001W	SVL3	Q03088	825 aa	Known RBP	5.75	□□□□□ -1.49
DEG1	YFL001W	HFI1	Q12060	488 aa		5.75	□□□□□ -1.49
DEG1	YFL001W	TCB3	Q03640	1545 aa	Known RBP	5.75	□□□□□ -1.49
DEG1	YFL001W	RPS9A	O13516	197 aa	Known RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	COX11	P19516	300 aa	Known RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	YKR073C	P36153	106 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	RIM4	P38741	713 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	CEP3	P40969	608 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	SHR5	P41912	237 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	BNA2	P47125	453 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	SLD3	P53135	668 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	NPY1	P53164	384 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	ENV11	P53246	860 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	5.74	□□□□□ -1.49	not detected
DEG1	YFL001W	YKR011C	Q02209	353 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	TMA64	Q04600	565 aa	Known RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	THI21	Q08975	551 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	RPS21A	P0C0V8	87 aa	Known RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	COQ2	P32378	372 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	TYE7	P33122	291 aa	Predicted RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	OAF3	P36023	863 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	SAP190	P36123	1033 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	KAE1	P36132	386 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	YKR051W	P36142	418 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	PEX7	P39108	375 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	RAI1	P53063	387 aa	Known RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	PAP2	P53632	584 aa	Known RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	PTA1	Q01329	785 aa	Predicted RBP	5.74	□□□□□ -1.49
DEG1	YFL001W	VPS30	Q02948	557 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	PEX15	Q08215	383 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	YPR027C	Q12079	277 aa		5.74	□□□□□ -1.49
DEG1	YFL001W	TRP3	P00937	484 aa		5.73	□□□□□ -1.49
DEG1	YFL001W	PTH2	P34222	208 aa		5.73	□□□□□ -1.49
DEG1	YFL001W	YKR018C	P36114	725 aa		5.73	□□□□□ -1.49
DEG1	YFL001W	RFC5	P38251	354 aa		5.73	□□□□□ -1.49
DEG1	YFL001W	OYE3	P41816	400 aa	Predicted RBP	5.73	□□□□□ -1.49
DEG1	YFL001W	RCM1	P53972	490 aa		5.73	□□□□□ -1.49
DEG1	YFL001W	YHM2	Q04013	314 aa		5.73	□□□□□ -1.49
DEG1	YFL001W	CRR1	Q05790	422 aa		5.73	□□□□□ -1.49
DEG1	YFL001W	RPN7	Q06103	429 aa	Known RBP	5.73	□□□□□ -1.49
DEG1	YFL001W	RPS21B	Q3E754	87 aa	Known RBP	5.73	□□□□□ -1.49
DEG1	YFL001W	PRC1	P00729	532 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	NAM7	P30771	971 aa	Known RBP	5.72	□□□□□ -1.49
DEG1	YFL001W	ELM1	P32801	640 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	MRS6	P32864	603 aa	Known RBP	5.72	□□□□□ -1.49
DEG1	YFL001W	SER1	P33330	395 aa	Known RBP	5.72	□□□□□ -1.49
DEG1	YFL001W	YKL222C	P35995	705 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	AKR1	P39010	764 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	YFL052W	P43551	465 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	SIZ1	Q04195	904 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	TRE1	Q08919	783 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	DCS2	Q12123	353 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	YOR022C	Q12204	715 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	YLR149C	Q99296	730 aa		5.72	□□□□□ -1.49
DEG1	YFL001W	LIP5	P32875	414 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	MNN4	P36044	1178 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	ABZ1	P37254	787 aa	Predicted RBP	5.71	□□□□□ -1.5
DEG1	YFL001W	YHL041W	P38730	149 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	ZIP2	P53061	704 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	TAN1	P53072	289 aa	Predicted RBP	5.71	□□□□□ -1.5
DEG1	YFL001W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.71	□□□□□ -1.5	not detected
DEG1	YFL001W	PSR2	Q07949	397 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	YPL277C	Q08989	487 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	HAL9	Q12180	1030 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	YLR122C	Q12312	125 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	RIB2	Q12362	591 aa	Known RBP	5.71	□□□□□ -1.5
DEG1	YFL001W	Q0142	Q9ZZW4	58 aa		5.71	□□□□□ -1.5
DEG1	YFL001W	SPS1	P08458	490 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	HSF1	P10961	833 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	KIN2	P13186	1147 aa	Known RBP	5.7	□□□□□ -1.5
DEG1	YFL001W	APL1	P27351	700 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	RPD3	P32561	433 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	5.7	□□□□□ -1.5	not detected
DEG1	YFL001W	YKU70	P32807	602 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	AIM26	P32858	118 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	SRP101	P32916	621 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	MAL31	P38156	614 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	HIS6	P40545	261 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	PCL10	P53124	433 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	PUS2	P53167	370 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	CNM67	P53865	581 aa	Known RBP	5.7	□□□□□ -1.5
DEG1	YFL001W	MSC2	Q03455	724 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	CDA1	Q06702	301 aa		5.7	□□□□□ -1.5
DEG1	YFL001W	FBP1	P09201	348 aa		5.69	□□□□□ -1.5
DEG1	YFL001W	SEC65	P29478	273 aa		5.69	□□□□□ -1.5
DEG1	YFL001W	FLR1	P38124	548 aa		5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 44.4 ms