RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeast

Gene PRE1, Length 597 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE1	YER012W	SAK1	P38990	1142 aa		4.96	□□□□□ -1.62
PRE1	YER012W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
PRE1	YER012W	REV3	P14284	1504 aa		4.96	□□□□□ -1.62
PRE1	YER012W	PRC1	P00729	532 aa		4.95	□□□□□ -1.62
PRE1	YER012W	CAF20	P12962	161 aa	Known RBP	4.95	□□□□□ -1.62
PRE1	YER012W	SPC42	P36094	363 aa		4.95	□□□□□ -1.62
PRE1	YER012W	UBP6	P43593	499 aa	Known RBP	4.95	□□□□□ -1.62
PRE1	YER012W	MUS81	Q04149	632 aa	Predicted RBP	4.95	□□□□□ -1.62
PRE1	YER012W	CIT1	P00890	479 aa		4.94	□□□□□ -1.62
PRE1	YER012W	TOM70	P07213	617 aa	Known RBP	4.94	□□□□□ -1.62
PRE1	YER012W	SAP190	P36123	1033 aa		4.94	□□□□□ -1.62
PRE1	YER012W	BET3	P36149	193 aa		4.94	□□□□□ -1.62
PRE1	YER012W	SSY5	P47002	699 aa		4.94	□□□□□ -1.62
PRE1	YER012W	ASI2	P53895	289 aa		4.94	□□□□□ -1.62
PRE1	YER012W	PKH1	Q03407	766 aa		4.94	□□□□□ -1.62
PRE1	YER012W	IRC10	Q08118	586 aa		4.94	□□□□□ -1.62
PRE1	YER012W	SSN2	P38931	1420 aa		4.93	□□□□□ -1.62
PRE1	YER012W	PZF1	P39933	429 aa		4.93	□□□□□ -1.62
PRE1	YER012W	STU2	P46675	888 aa		4.93	□□□□□ -1.62
PRE1	YER012W	NIT3	P49954	291 aa		4.93	□□□□□ -1.62
PRE1	YER012W	NOG2	P53742	486 aa	Known RBP	4.93	□□□□□ -1.62
PRE1	YER012W	TIM44	Q01852	431 aa		4.93	□□□□□ -1.62
PRE1	YER012W	ASM4	Q05166	528 aa		4.93	□□□□□ -1.62
PRE1	YER012W	CRR1	Q05790	422 aa		4.93	□□□□□ -1.62
PRE1	YER012W	ADY4	Q05955	493 aa		4.93	□□□□□ -1.62
PRE1	YER012W	YBR053C	P38235	358 aa		4.92	□□□□□ -1.62
PRE1	YER012W	YHR020W	P38708	688 aa	Known RBP	4.92	□□□□□ -1.62
PRE1	YER012W	GGA2	P38817	585 aa	Known RBP	4.92	□□□□□ -1.62
PRE1	YER012W	PFA3	P42836	336 aa		4.92	□□□□□ -1.62
PRE1	YER012W	QRI1	P43123	477 aa	Known RBP	4.92	□□□□□ -1.62
PRE1	YER012W	LGE1	Q02796	332 aa	Known RBP	4.92	□□□□□ -1.62
PRE1	YER012W	TAF8	Q03750	510 aa		4.92	□□□□□ -1.62
PRE1	YER012W	YDL124W	Q07551	312 aa	Known RBP	4.92	□□□□□ -1.62
PRE1	YER012W	FLC1	Q08967	793 aa		4.92	□□□□□ -1.62
PRE1	YER012W	RTA1	P53047	317 aa		4.91	□□□□□ -1.62
PRE1	YER012W	HUL5	P53119	910 aa		4.91	□□□□□ -1.62
PRE1	YER012W	YGR283C	P53336	341 aa	Predicted RBP	4.91	□□□□□ -1.62
PRE1	YER012W	TAF2	P23255	1407 aa		4.9	□□□□□ -1.62
PRE1	YER012W	EMC3	P36039	253 aa		4.9	□□□□□ -1.63
PRE1	YER012W	SDS3	P40505	327 aa		4.9	□□□□□ -1.63
PRE1	YER012W	HUL4	P40985	892 aa		4.9	□□□□□ -1.63
PRE1	YER012W	YJL163C	P46996	555 aa		4.9	□□□□□ -1.63
PRE1	YER012W	NRG1	Q03125	231 aa		4.9	□□□□□ -1.63
PRE1	YER012W	IRC13	Q08630	104 aa		4.9	□□□□□ -1.63
PRE1	YER012W	MRH1	Q12117	320 aa	Predicted RBP	4.9	□□□□□ -1.63
PRE1	YER012W	BPT1	P14772	1559 aa		4.9	□□□□□ -1.63
PRE1	YER012W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
PRE1	YER012W	PCL5	P38794	229 aa		4.89	□□□□□ -1.63
PRE1	YER012W	RSC3	Q06639	885 aa		4.89	□□□□□ -1.63
PRE1	YER012W	HBT1	Q07653	1046 aa	Known RBP	4.89	□□□□□ -1.63
PRE1	YER012W	YLR415C	O13578	112 aa		4.88	□□□□□ -1.63
PRE1	YER012W	PER1	P25625	357 aa		4.88	□□□□□ -1.63
PRE1	YER012W	YHL017W	P38745	532 aa		4.88	□□□□□ -1.63
PRE1	YER012W	ALG2	P43636	503 aa		4.88	□□□□□ -1.63
PRE1	YER012W	TGL5	Q12043	749 aa		4.88	□□□□□ -1.63
PRE1	YER012W	SUT2	Q12286	268 aa		4.88	□□□□□ -1.63
PRE1	YER012W	SIN3	P22579	1536 aa		4.87	□□□□□ -1.63
PRE1	YER012W	CAN1	P04817	590 aa		4.87	□□□□□ -1.63
PRE1	YER012W	PEX2	P32800	271 aa		4.87	□□□□□ -1.63
PRE1	YER012W	HIS7	P33734	552 aa	Known RBP	4.87	□□□□□ -1.63
PRE1	YER012W	RSP5	P39940	809 aa	Known RBP	4.87	□□□□□ -1.63
PRE1	YER012W	MET7	Q08645	548 aa		4.87	□□□□□ -1.63
PRE1	YER012W	GPR1	Q12361	961 aa		4.87	□□□□□ -1.63
PRE1	YER012W	ATF1	P40353	525 aa		4.86	□□□□□ -1.63
PRE1	YER012W	SHR5	P41912	237 aa		4.86	□□□□□ -1.63
PRE1	YER012W	DAS1	P47005	663 aa		4.86	□□□□□ -1.63
PRE1	YER012W	YDR514C	Q04408	483 aa		4.86	□□□□□ -1.63
PRE1	YER012W	THI21	Q08975	551 aa		4.86	□□□□□ -1.63
PRE1	YER012W	SSK2	P53599	1579 aa		4.86	□□□□□ -1.63
PRE1	YER012W	TDP1	P38319	544 aa		4.85	□□□□□ -1.63
PRE1	YER012W	SET5	P38890	526 aa	Known RBP	4.85	□□□□□ -1.63
PRE1	YER012W	DAM1	P53267	343 aa		4.85	□□□□□ -1.63
PRE1	YER012W	YBR182C-A	Q8TGU6	64 aa		4.85	□□□□□ -1.63
PRE1	YER012W	ESP1	Q03018	1630 aa		4.84	□□□□□ -1.63
PRE1	YER012W	SKI3	P17883	1432 aa	Known RBP	4.84	□□□□□ -1.63
PRE1	YER012W	NGG1	P32494	702 aa		4.84	□□□□□ -1.63
PRE1	YER012W	YIR042C	P40586	236 aa		4.84	□□□□□ -1.63
PRE1	YER012W	TY4A-J	P47023	414 aa		4.84	□□□□□ -1.63
PRE1	YER012W	MTR3	P48240	250 aa	Predicted RBP	4.84	□□□□□ -1.63
PRE1	YER012W	AMA1	P50082	593 aa		4.84	□□□□□ -1.63
PRE1	YER012W	HOS4	P40480	1083 aa		4.83	□□□□□ -1.64
PRE1	YER012W	REH1	Q06709	432 aa		4.83	□□□□□ -1.64
PRE1	YER012W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
PRE1	YER012W	SPC29	P33419	253 aa		4.82	□□□□□ -1.64
PRE1	YER012W	CBR1	P38626	284 aa	Known RBP	4.82	□□□□□ -1.64
PRE1	YER012W	BCD1	P38772	366 aa		4.82	□□□□□ -1.64
PRE1	YER012W	RLP7	P40693	322 aa	Known RBP	4.82	□□□□□ -1.64
PRE1	YER012W	HXT16	P47185	567 aa		4.82	□□□□□ -1.64
PRE1	YER012W	ZIP2	P53061	704 aa		4.82	□□□□□ -1.64
PRE1	YER012W	NOP7	P53261	605 aa	Known RBP	4.82	□□□□□ -1.64
PRE1	YER012W	BDF2	Q07442	638 aa		4.82	□□□□□ -1.64
PRE1	YER012W	DIF1	O13577	133 aa		4.81	□□□□□ -1.64
PRE1	YER012W	LAT1	P12695	482 aa	Known RBP	4.81	□□□□□ -1.64
PRE1	YER012W	CUE2	P36075	443 aa	Known RBP	4.81	□□□□□ -1.64
PRE1	YER012W	YDR338C	Q05497	695 aa		4.81	□□□□□ -1.64
PRE1	YER012W	CDC53	Q12018	815 aa	Known RBP	4.81	□□□□□ -1.64
PRE1	YER012W	TY2B-LR1	P0C2J3	1770 aa		4.81	□□□□□ -1.64
PRE1	YER012W	TY2B-F	P0CX63	1770 aa		4.81	□□□□□ -1.64
PRE1	YER012W	TY2B-GR2	P0CX64	1770 aa		4.81	□□□□□ -1.64
PRE1	YER012W	TY2B-C	P25384	1770 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 41.5 ms