RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU56	YDR240C	MCH5	Q08777	521 aa		4.1	□□□□□ -1.75
SNU56	YDR240C	THI21	Q08975	551 aa		4.1	□□□□□ -1.75
SNU56	YDR240C	YOR022C	Q12204	715 aa		4.1	□□□□□ -1.75
SNU56	YDR240C	PRC1	P00729	532 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	CAF20	P12962	161 aa	Known RBP	4.09	□□□□□ -1.75
SNU56	YDR240C	PRP4	P20053	465 aa	Known RBP	4.09	□□□□□ -1.75
SNU56	YDR240C	SET5	P38890	526 aa	Known RBP	4.09	□□□□□ -1.75
SNU56	YDR240C	DAS1	P47005	663 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	AMA1	P50082	593 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	RTA1	P53047	317 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	ADY4	Q05955	493 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	RSC3	Q06639	885 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	FRE5	Q08908	694 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	TRM13	Q12383	476 aa		4.09	□□□□□ -1.75
SNU56	YDR240C	SPC29	P33419	253 aa		4.08	□□□□□ -1.76
SNU56	YDR240C	SAP190	P36123	1033 aa		4.08	□□□□□ -1.76
SNU56	YDR240C	SIC1	P38634	284 aa		4.08	□□□□□ -1.76
SNU56	YDR240C	CHZ1	P40019	153 aa	Predicted RBP	4.08	□□□□□ -1.76
SNU56	YDR240C	SSY5	P47002	699 aa		4.08	□□□□□ -1.76
SNU56	YDR240C	ZDS1	P50111	915 aa	Known RBP	4.08	□□□□□ -1.76
SNU56	YDR240C	LRS4	Q04087	347 aa	Known RBP	4.08	□□□□□ -1.76
SNU56	YDR240C	MUS81	Q04149	632 aa	Predicted RBP	4.08	□□□□□ -1.76
SNU56	YDR240C	CDC53	Q12018	815 aa	Known RBP	4.08	□□□□□ -1.76
SNU56	YDR240C	YLR415C	O13578	112 aa		4.07	□□□□□ -1.76
SNU56	YDR240C	FKH2	P41813	862 aa		4.07	□□□□□ -1.76
SNU56	YDR240C	STU2	P46675	888 aa		4.07	□□□□□ -1.76
SNU56	YDR240C	MET7	Q08645	548 aa		4.07	□□□□□ -1.76
SNU56	YDR240C	YCL002C	P25565	263 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	YBR053C	P38235	358 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	SAK1	P38990	1142 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	PFA3	P42836	336 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	STB4	P50104	949 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	NRG1	Q03125	231 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	TMN2	Q04562	672 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	HBT1	Q07653	1046 aa	Known RBP	4.06	□□□□□ -1.76
SNU56	YDR240C	YOR131C	Q12486	218 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	YOL098C	Q12496	1037 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	ATG11	Q12527	1178 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	YBR182C-A	Q8TGU6	64 aa		4.06	□□□□□ -1.76
SNU56	YDR240C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
SNU56	YDR240C	YHL017W	P38745	532 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	YIR042C	P40586	236 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	RLP7	P40693	322 aa	Known RBP	4.05	□□□□□ -1.76
SNU56	YDR240C	QRI1	P43123	477 aa	Known RBP	4.05	□□□□□ -1.76
SNU56	YDR240C	MUP1	P50276	574 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	MRPS35	P53292	345 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	DIF1	O13577	133 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	ECM1	P39715	212 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	SHR5	P41912	237 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	HXT16	P47185	567 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	ZIP2	P53061	704 aa		4.05	□□□□□ -1.76
SNU56	YDR240C	LAT1	P12695	482 aa	Known RBP	4.04	□□□□□ -1.76
SNU56	YDR240C	YBR259W	P38338	688 aa		4.04	□□□□□ -1.76
SNU56	YDR240C	YJL163C	P46996	555 aa		4.04	□□□□□ -1.76
SNU56	YDR240C	MUK1	Q02866	612 aa		4.04	□□□□□ -1.76
SNU56	YDR240C	IRC10	Q08118	586 aa		4.04	□□□□□ -1.76
SNU56	YDR240C	GPR1	Q12361	961 aa		4.04	□□□□□ -1.76
SNU56	YDR240C	PPS1	P38148	807 aa		4.03	□□□□□ -1.76
SNU56	YDR240C	GDH3	P39708	457 aa		4.03	□□□□□ -1.76
SNU56	YDR240C	MTR3	P48240	250 aa	Predicted RBP	4.03	□□□□□ -1.76
SNU56	YDR240C	RIA1	P53893	1110 aa		4.03	□□□□□ -1.76
SNU56	YDR240C	RPN4	Q03465	531 aa		4.03	□□□□□ -1.76
SNU56	YDR240C	YMR206W	Q03695	313 aa		4.03	□□□□□ -1.76
SNU56	YDR240C	SDS3	P40505	327 aa		4.02	□□□□□ -1.77
SNU56	YDR240C	TY4A-J	P47023	414 aa		4.02	□□□□□ -1.77
SNU56	YDR240C	ALY2	P47029	1046 aa		4.02	□□□□□ -1.77
SNU56	YDR240C	HSV2	P50079	448 aa	Predicted RBP	4.02	□□□□□ -1.77
SNU56	YDR240C	CRR1	Q05790	422 aa		4.02	□□□□□ -1.77
SNU56	YDR240C	SRP40	P32583	406 aa	Predicted RBP	4.01	□□□□□ -1.77
SNU56	YDR240C	MTH1	P35198	433 aa		4.01	□□□□□ -1.77
SNU56	YDR240C	OCA5	P38738	679 aa		4.01	□□□□□ -1.77
SNU56	YDR240C	TGL5	Q12043	749 aa		4.01	□□□□□ -1.77
SNU56	YDR240C	MTC2	P34246	357 aa		4	□□□□□ -1.77
SNU56	YDR240C	FMP52	P40008	231 aa		4	□□□□□ -1.77
SNU56	YDR240C	YBP2	P53169	641 aa		4	□□□□□ -1.77
SNU56	YDR240C	GND2	P53319	492 aa		4	□□□□□ -1.77
SNU56	YDR240C	MDM12	Q92328	271 aa		4	□□□□□ -1.77
SNU56	YDR240C	PER1	P25625	357 aa		3.99	□□□□□ -1.77
SNU56	YDR240C	SPC42	P36094	363 aa		3.99	□□□□□ -1.77
SNU56	YDR240C	ATF1	P40353	525 aa		3.99	□□□□□ -1.77
SNU56	YDR240C	BAP3	P41815	604 aa		3.99	□□□□□ -1.77
SNU56	YDR240C	MAL11	P53048	616 aa		3.99	□□□□□ -1.77
SNU56	YDR240C	YDR338C	Q05497	695 aa		3.99	□□□□□ -1.77
SNU56	YDR240C	SGO1	Q08490	590 aa		3.99	□□□□□ -1.77
SNU56	YDR240C	GSY1	P23337	708 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	YKL091C	P33324	310 aa	Known RBP	3.98	□□□□□ -1.77
SNU56	YDR240C	STO1	P34160	861 aa	Known RBP	3.98	□□□□□ -1.77
SNU56	YDR240C	MCD4	P36051	919 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.98	□□□□□ -1.77	not detected
SNU56	YDR240C	HOS4	P40480	1083 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	BUD6	P41697	788 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	BNA2	P47125	453 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	YAP1802	P53309	568 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	GAD1	Q04792	585 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	IRC13	Q08630	104 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	ERR1	P0CX10	437 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	ERR2	P0CX11	437 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	BCD1	P38772	366 aa		3.98	□□□□□ -1.77
SNU56	YDR240C	RPN10	P38886	268 aa	Known RBP	3.98	□□□□□ -1.77
SNU56	YDR240C	SNM1	P40993	198 aa		3.98	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms