RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	NPP1	P25353	742 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	SRO9	P25567	434 aa	Known RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	GDA1	P32621	518 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	YKL023W	P36103	277 aa	Known RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	PGM2	P37012	569 aa	Known RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	CDC27	P38042	758 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	RTC3	P38804	111 aa	Predicted RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	RPN10	P38886	268 aa	Known RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	RVS167	P39743	482 aa	Known RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	ZIP2	P53061	704 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	PEF1	P53238	335 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	INA17	Q02888	182 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	ERO1	Q03103	563 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	UFO1	Q04511	668 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	DIB1	Q06819	143 aa	Predicted RBP	4.58	□□□□□ -1.68
SSB1	YDL229W	REC8	Q12188	680 aa		4.58	□□□□□ -1.68
SSB1	YDL229W	LTE1	P07866	1435 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	ATP4	P05626	244 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	ADE3	P07245	946 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	VAS1	P07806	1104 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	TIF1	P10081	395 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	PWP1	P21304	576 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	PRP5	P21372	849 aa	Predicted RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	DAL7	P21826	554 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	DBF2	P22204	572 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	YDJ1	P25491	409 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	KRE2	P27809	442 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	ICL1	P28240	557 aa	Predicted RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	YJU2	P28320	278 aa	Predicted RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	BIO2	P32451	375 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	DPH2	P32461	534 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	SRB4	P32569	687 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	TFB1	P32776	642 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	CUE2	P36075	443 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	MRPL17	P36528	281 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	CHK1	P38147	527 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	KAP104	P38217	918 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	PEX32	P38292	413 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	FCY21	P40039	528 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	CIR1	P42940	261 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	GNP1	P48813	663 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	DSE4	P53753	1117 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	GOR1	P53839	350 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	SIW14	P53965	281 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	USA1	Q03714	838 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	FIN1	Q03898	291 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	RVB1	Q03940	463 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	RPN9	Q04062	393 aa	Known RBP	4.57	□□□□□ -1.68
SSB1	YDL229W	SHE9	Q04172	456 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	YLR287C	Q05881	355 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	GMC2	Q06201	188 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	ESC8	Q08119	714 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	ATP16	Q12165	160 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	GCN2	P15442	1659 aa		4.57	□□□□□ -1.68
SSB1	YDL229W	SPO14	P36126	1683 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	RIP-Chip
SSB1	YDL229W	PMR1	P13586	950 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	NMT1	P14743	455 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	PEX1	P24004	1043 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	KCC4	P25389	1037 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	OXP1	P28273	1286 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	GLC3	P32775	704 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	TYE7	P33122	291 aa	Predicted RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	WHI3	P34761	661 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	APM3	P38153	483 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	SDH8	P38345	138 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	DED81	P38707	554 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	VMA22	P38784	181 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	AIM10	P39965	576 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	YIL077C	P40508	320 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	GYP8	P43570	497 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	MNN11	P46985	422 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	VMA10	P48836	114 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	NIT3	P49954	291 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	YGR021W	P53212	290 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	RCM1	P53972	490 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	HER2	Q03557	464 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	HMO1	Q03973	246 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	RSM24	Q03976	319 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	ARP10	Q04549	284 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	IVY1	Q04934	453 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	COA4	Q05809	96 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	FAP7	Q12055	197 aa	Predicted RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	ADF1	Q2V2Q1	113 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	HAP1	P0CE41	1502 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	INH1	P01097	85 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	KIN2	P13186	1147 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	REC107	P21651	314 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	MRPL8	P22353	238 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	PTC3	P34221	468 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	MRX3	P38172	270 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	BSD2	P38356	321 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	TDA3	P38758	523 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	IES5	P40060	125 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	ULP2	P40537	1034 aa	Predicted RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	BRE2	P43132	505 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	BNA1	P47096	177 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	ILM1	P47155	203 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	GCV2	P49095	1034 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	YNL193W	P53870	558 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 39.6 ms