RNA–Protein interactions for RNA: YBR030W

RKM3, Transcript of Ribosomal lysine methyltransferase, yeast

Gene RKM3, Length 1,659 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKM3	YBR030W	YHM2	Q04013	314 aa		4.96	□□□□□ -1.61
RKM3	YBR030W	YLR257W	Q06146	321 aa	Known RBP	4.96	□□□□□ -1.61
RKM3	YBR030W	YLL058W	Q12198	575 aa		4.96	□□□□□ -1.61
RKM3	YBR030W	YLL054C	Q12244	843 aa		4.96	□□□□□ -1.61
RKM3	YBR030W	APM4	Q99186	491 aa		4.96	□□□□□ -1.61
RKM3	YBR030W	NHA1	Q99271	985 aa		4.96	□□□□□ -1.61
RKM3	YBR030W	MSM1	P22438	575 aa		4.96	□□□□□ -1.62
RKM3	YBR030W	CDC48	P25694	835 aa	Known RBP	4.96	□□□□□ -1.62
RKM3	YBR030W	CHS3	P29465	1165 aa		4.96	□□□□□ -1.62
RKM3	YBR030W	HSL7	P38274	827 aa		4.96	□□□□□ -1.62
RKM3	YBR030W	YER158C	P40095	573 aa		4.96	□□□□□ -1.62
RKM3	YBR030W	PTA1	Q01329	785 aa	Predicted RBP	4.96	□□□□□ -1.62
RKM3	YBR030W	MDM38	Q08179	573 aa		4.96	□□□□□ -1.62
RKM3	YBR030W	GAS5	Q08193	484 aa		4.96	□□□□□ -1.62
RKM3	YBR030W	CDC31	P06704	161 aa	Known RBP	4.95	□□□□□ -1.62
RKM3	YBR030W	APL2	P36000	726 aa	Predicted RBP	4.95	□□□□□ -1.62
RKM3	YBR030W	OAF3	P36023	863 aa		4.95	□□□□□ -1.62
RKM3	YBR030W	MAL31	P38156	614 aa		4.95	□□□□□ -1.62
RKM3	YBR030W	YJL045W	P47052	634 aa		4.95	□□□□□ -1.62
RKM3	YBR030W	MTC3	P53077	123 aa		4.95	□□□□□ -1.62
RKM3	YBR030W	ENV11	P53246	860 aa		4.95	□□□□□ -1.62
RKM3	YBR030W	OPY2	Q06810	360 aa		4.95	□□□□□ -1.62
RKM3	YBR030W	SEC18	P18759	758 aa	Known RBP	4.94	□□□□□ -1.62
RKM3	YBR030W	DAL7	P21826	554 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	YCL002C	P25565	263 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	IMP2'	P32351	346 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	MAE1	P36013	669 aa	Known RBP	4.94	□□□□□ -1.62
RKM3	YBR030W	MNN4	P36044	1178 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	FAT1	P38225	669 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	GIC1	P38785	314 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	ESL1	P40456	1118 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	RLP7	P40693	322 aa	Known RBP	4.94	□□□□□ -1.62
RKM3	YBR030W	BNA1	P47096	177 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	SRB7	P47822	140 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	MEP3	P53390	489 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	NCE103	P53615	221 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	MOT3	P54785	490 aa	Known RBP	4.94	□□□□□ -1.62
RKM3	YBR030W	LRS4	Q04087	347 aa	Known RBP	4.94	□□□□□ -1.62
RKM3	YBR030W	MED1	Q12321	566 aa		4.94	□□□□□ -1.62
RKM3	YBR030W	SNU66	Q12420	587 aa	Predicted RBP	4.94	□□□□□ -1.62
RKM3	YBR030W	BI4	P03879	638 aa		4.93	□□□□□ -1.62
RKM3	YBR030W	HCA4	P20448	770 aa	Known RBP	4.93	□□□□□ -1.62
RKM3	YBR030W	PET309	P32522	965 aa	Predicted RBP	4.93	□□□□□ -1.62
RKM3	YBR030W	NMD3	P38861	518 aa	Known RBP	4.93	□□□□□ -1.62
RKM3	YBR030W	SFB2	P53953	876 aa		4.93	□□□□□ -1.62
RKM3	YBR030W	SRT1	Q03175	343 aa		4.93	□□□□□ -1.62
RKM3	YBR030W	HIM1	Q06674	414 aa		4.93	□□□□□ -1.62
RKM3	YBR030W	YBR182C-A	Q8TGU6	64 aa		4.93	□□□□□ -1.62
RKM3	YBR030W	SNF5	P18480	905 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	ATP12	P22135	325 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	YKR051W	P36142	418 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	TMA108	P40462	946 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	NOG2	P53742	486 aa	Known RBP	4.92	□□□□□ -1.62
RKM3	YBR030W	DSE4	P53753	1117 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	HOS3	Q02959	697 aa	Known RBP	4.92	□□□□□ -1.62
RKM3	YBR030W	TSR2	Q06672	205 aa	Known RBP	4.92	□□□□□ -1.62
RKM3	YBR030W	CLF1	Q12309	687 aa	Predicted RBP	4.92	□□□□□ -1.62
RKM3	YBR030W	GFA1	P14742	717 aa	Known RBP	4.92	□□□□□ -1.62
RKM3	YBR030W	HOP1	P20050	605 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	BLI1	P35727	113 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	NNK1	P36003	928 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	PSY4	P38193	441 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	RRM3	P38766	723 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	RNR4	P49723	345 aa	Known RBP	4.92	□□□□□ -1.62
RKM3	YBR030W	BUD9	P53226	547 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	TEP1	P53916	434 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	YMR018W	Q04364	514 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	HLR1	Q04429	423 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	BLS1	Q06071	122 aa		4.92	□□□□□ -1.62
RKM3	YBR030W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
RKM3	YBR030W	DIF1	O13577	133 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	SEC65	P29478	273 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	FUN30	P31380	1131 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	TOA1	P32773	286 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	BNA2	P47125	453 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	ASK10	P48361	1146 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	DOT1	Q04089	582 aa	Known RBP	4.91	□□□□□ -1.62
RKM3	YBR030W	OMS1	Q06668	471 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	HRK1	Q08732	759 aa	Known RBP	4.91	□□□□□ -1.62
RKM3	YBR030W	YOR223W	Q12015	292 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	DCS2	Q12123	353 aa		4.91	□□□□□ -1.62
RKM3	YBR030W	MSH1	P25846	959 aa		4.9	□□□□□ -1.62
RKM3	YBR030W	YSC84	P32793	468 aa		4.9	□□□□□ -1.62
RKM3	YBR030W	SMY2	P32909	740 aa	Known RBP	4.9	□□□□□ -1.62
RKM3	YBR030W	SHM2	P37291	469 aa	Known RBP	4.9	□□□□□ -1.62
RKM3	YBR030W	TNA1	P53322	534 aa		4.9	□□□□□ -1.62
RKM3	YBR030W	YPR196W	Q06595	470 aa		4.9	□□□□□ -1.62
RKM3	YBR030W	Q0142	Q9ZZW4	58 aa		4.9	□□□□□ -1.62
RKM3	YBR030W	SSM4	P40318	1319 aa		4.9	□□□□□ -1.62
RKM3	YBR030W	URA1	P28272	314 aa	Predicted RBP	4.89	□□□□□ -1.63
RKM3	YBR030W	CYS3	P31373	394 aa	Known RBP	4.89	□□□□□ -1.63
RKM3	YBR030W	RRN3	P36070	627 aa		4.89	□□□□□ -1.63
RKM3	YBR030W	VPS8	P39702	1274 aa		4.89	□□□□□ -1.63
RKM3	YBR030W	CRR1	Q05790	422 aa		4.89	□□□□□ -1.63
RKM3	YBR030W	RPN7	Q06103	429 aa	Known RBP	4.89	□□□□□ -1.63
RKM3	YBR030W	RCL1	Q08096	367 aa	Predicted RBP	4.89	□□□□□ -1.63
RKM3	YBR030W	NUR1	Q12066	484 aa		4.89	□□□□□ -1.63
RKM3	YBR030W	TY1A-NL1	Q12391	440 aa	Known RBP	4.89	□□□□□ -1.63
RKM3	YBR030W	RFA1	P22336	621 aa	Known RBP	4.89	□□□□□ -1.63
RKM3	YBR030W	RER1	P25560	188 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 227.8 ms