RNA–Protein interactions for RNA: YNR015W

SMM1, Transcript of Dihydrouridine synthase, yeast

Gene SMM1, Length 1,155 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMM1	YNR015W	MRX3	P38172	270 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	VID24	P38263	362 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	UBX7	P38349	436 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	MSC7	P38694	644 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	YAP1801	P38856	637 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	CCM1	P48237	864 aa	Predicted RBP	10.21	□□□□□ -0.77
SMM1	YNR015W	GCV2	P49095	1034 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	EAF7	P53911	425 aa	Known RBP	10.21	□□□□□ -0.77
SMM1	YNR015W	EAR1	Q03212	550 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	DOT1	Q04089	582 aa	Known RBP	10.21	□□□□□ -0.77
SMM1	YNR015W	MED1	Q12321	566 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	PCD1	Q12524	340 aa		10.21	□□□□□ -0.77
SMM1	YNR015W	OM45	P16547	393 aa		10.2	□□□□□ -0.78
SMM1	YNR015W	PSO2	P30620	661 aa		10.2	□□□□□ -0.78
SMM1	YNR015W	UBP5	P39944	805 aa		10.2	□□□□□ -0.78
SMM1	YNR015W	LCB2	P40970	561 aa		10.2	□□□□□ -0.78
SMM1	YNR015W	SHE10	P53075	577 aa		10.2	□□□□□ -0.78
SMM1	YNR015W	MAG2	Q06436	670 aa	Known RBP	10.2	□□□□□ -0.78
SMM1	YNR015W	ZPS1	Q12512	249 aa		10.2	□□□□□ -0.78
SMM1	YNR015W	COX4	P04037	155 aa		10.19	□□□□□ -0.78
SMM1	YNR015W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	10.19	□□□□□ -0.78	not detected
SMM1	YNR015W	MAK16	P10962	306 aa	Predicted RBP	10.19	□□□□□ -0.78
SMM1	YNR015W	GLN3	P18494	730 aa		10.19	□□□□□ -0.78
SMM1	YNR015W	YHL026C	P38740	315 aa		10.19	□□□□□ -0.78
SMM1	YNR015W	JHD1	P40034	492 aa		10.19	□□□□□ -0.78
SMM1	YNR015W	TOS3	P43637	560 aa		10.19	□□□□□ -0.78
SMM1	YNR015W	AIP1	P46680	615 aa	Known RBP	10.19	□□□□□ -0.78
SMM1	YNR015W	ORC5	P50874	479 aa		10.19	□□□□□ -0.78
SMM1	YNR015W	YNL134C	P53912	376 aa	Known RBP	10.19	□□□□□ -0.78
SMM1	YNR015W	TRS130	Q03660	1102 aa		10.19	□□□□□ -0.78
SMM1	YNR015W	TOM70	P07213	617 aa	Known RBP	10.18	□□□□□ -0.78
SMM1	YNR015W	TIF1	P10081	395 aa	Known RBP	10.18	□□□□□ -0.78
SMM1	YNR015W	SKG6	P32900	734 aa	Predicted RBP	10.18	□□□□□ -0.78
SMM1	YNR015W	ADE17	P38009	592 aa	Known RBP	10.18	□□□□□ -0.78
SMM1	YNR015W	LAM5	P43560	674 aa		10.18	□□□□□ -0.78
SMM1	YNR015W	EBS1	Q03466	884 aa	Known RBP	10.18	□□□□□ -0.78
SMM1	YNR015W	UTP14	Q04500	899 aa	Known RBP	10.18	□□□□□ -0.78
SMM1	YNR015W	ADE4	P04046	510 aa	Known RBP	10.17	□□□□□ -0.78
SMM1	YNR015W	ATE1	P16639	503 aa		10.17	□□□□□ -0.78
SMM1	YNR015W	SLX1	P38324	304 aa		10.17	□□□□□ -0.78
SMM1	YNR015W	AHC1	Q12433	566 aa		10.17	□□□□□ -0.78
SMM1	YNR015W	MRC1	P25588	1096 aa		10.16	□□□□□ -0.78
SMM1	YNR015W	MUD1	P32605	298 aa	Known RBP	10.16	□□□□□ -0.78
SMM1	YNR015W	RPT1	P33299	467 aa	Known RBP	10.16	□□□□□ -0.78
SMM1	YNR015W	MMS4	P38257	691 aa		10.16	□□□□□ -0.78
SMM1	YNR015W	RSC8	P43609	557 aa	Known RBP	10.16	□□□□□ -0.78
SMM1	YNR015W	ISM1	P48526	1002 aa		10.16	□□□□□ -0.78
SMM1	YNR015W	ASN1	P49089	572 aa	Known RBP	10.16	□□□□□ -0.78
SMM1	YNR015W	SKY1	Q03656	742 aa		10.16	□□□□□ -0.78
SMM1	YNR015W	GFD1	Q04839	188 aa	Known RBP	10.16	□□□□□ -0.78
SMM1	YNR015W	HCR1	Q05775	265 aa	Known RBP	10.16	□□□□□ -0.78
SMM1	YNR015W	COG4	Q06096	861 aa		10.16	□□□□□ -0.78
SMM1	YNR015W	RLP24	Q07915	199 aa	Known RBP	10.16	□□□□□ -0.78
SMM1	YNR015W	UBR2	Q07963	1872 aa		10.15	□□□□□ -0.78
SMM1	YNR015W	CDC37	P06101	506 aa	Known RBP	10.15	□□□□□ -0.78
SMM1	YNR015W	PSY4	P38193	441 aa		10.15	□□□□□ -0.78
SMM1	YNR015W	OPT1	P40897	799 aa		10.15	□□□□□ -0.78
SMM1	YNR015W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	10.15	□□□□□ -0.78	not detected
SMM1	YNR015W	HSH155	P49955	971 aa	Known RBP	10.15	□□□□□ -0.78
SMM1	YNR015W	SSL2	Q00578	843 aa		10.15	□□□□□ -0.78
SMM1	YNR015W	DON1	Q05610	365 aa		10.15	□□□□□ -0.78
SMM1	YNR015W	FAL1	Q12099	399 aa	Known RBP	10.15	□□□□□ -0.78
SMM1	YNR015W	CHS2	P14180	963 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	KNS1	P32350	737 aa	Predicted RBP	10.14	□□□□□ -0.79
SMM1	YNR015W	NPP2	P39997	493 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	YER186C	P40101	306 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	ESL1	P40456	1118 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	ALT2	P52892	507 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	TIM8	P57744	87 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	YLR455W	Q06188	304 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	SHS1	Q07657	551 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	MLH2	Q07980	695 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	YAP7	Q08182	245 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	YOR022C	Q12204	715 aa		10.14	□□□□□ -0.79
SMM1	YNR015W	VMA1	P17255	1071 aa	Known RBP	10.13	□□□□□ -0.79
SMM1	YNR015W	RSA4	P25382	515 aa	Known RBP	10.13	□□□□□ -0.79
SMM1	YNR015W	PRR1	P28708	518 aa		10.13	□□□□□ -0.79
SMM1	YNR015W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	10.13	□□□□□ -0.79	not detected
SMM1	YNR015W	YET1	P35723	206 aa		10.13	□□□□□ -0.79
SMM1	YNR015W	RKM3	P38222	552 aa		10.13	□□□□□ -0.79
SMM1	YNR015W	ULI1	P43604	169 aa		10.13	□□□□□ -0.79
SMM1	YNR015W	EMI2	Q04409	500 aa	Known RBP	10.13	□□□□□ -0.79
SMM1	YNR015W	TMA16	Q08687	178 aa		10.13	□□□□□ -0.79
SMM1	YNR015W	RPL4A	P10664	362 aa	Known RBP	10.12	□□□□□ -0.79
SMM1	YNR015W	TAF13	P11747	167 aa		10.12	□□□□□ -0.79
SMM1	YNR015W	MSD1	P15179	658 aa	Known RBP	10.12	□□□□□ -0.79
SMM1	YNR015W	CSE2	P33308	149 aa		10.12	□□□□□ -0.79
SMM1	YNR015W	BUD16	P39988	312 aa		10.12	□□□□□ -0.79
SMM1	YNR015W	RPL4B	P49626	362 aa	Known RBP	10.12	□□□□□ -0.79
SMM1	YNR015W	MCM6	P53091	1017 aa	Known RBP	10.12	□□□□□ -0.79
SMM1	YNR015W	RSC1	P53236	928 aa		10.12	□□□□□ -0.79
SMM1	YNR015W	YVH1	Q02256	364 aa	Known RBP	10.12	□□□□□ -0.79
SMM1	YNR015W	WAR1	Q03631	944 aa		10.12	□□□□□ -0.79
SMM1	YNR015W	GIR2	Q03768	265 aa	Predicted RBP	10.12	□□□□□ -0.79
SMM1	YNR015W	FIG4	P42837	879 aa		10.11	□□□□□ -0.79
SMM1	YNR015W	YGR130C	P53278	816 aa		10.11	□□□□□ -0.79
SMM1	YNR015W	ALG11	P53954	548 aa	Known RBP	10.11	□□□□□ -0.79
SMM1	YNR015W	SGT2	Q12118	346 aa	Known RBP	10.11	□□□□□ -0.79
SMM1	YNR015W	ASP3-2	P0CX77	362 aa		10.1	□□□□□ -0.79
SMM1	YNR015W	ASP3-3	P0CX78	362 aa		10.1	□□□□□ -0.79

Retrieved 100 of 5,963 RNA–protein pairs in 90.4 ms