RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C YEL043WP32618 956 aa5.86□□□□□ -1.47
VPS1YKR001C PSY4P38193 441 aa5.86□□□□□ -1.47
VPS1YKR001C RIM11P38615 370 aa5.86□□□□□ -1.47
VPS1YKR001C ATG32P40458 529 aa5.86□□□□□ -1.47
VPS1YKR001C SNX4P47057 423 aa5.86□□□□□ -1.47
VPS1YKR001C YJR142WP47173 342 aa5.86□□□□□ -1.47
VPS1YKR001C PEX14P53112 341 aa5.86□□□□□ -1.47
VPS1YKR001C YNL144CP53907 740 aa5.86□□□□□ -1.47
VPS1YKR001C CEG1Q01159 459 aaPredicted RBP5.86□□□□□ -1.47
VPS1YKR001C MRS2Q01926 470 aa5.86□□□□□ -1.47
VPS1YKR001C YPL034WQ03083 165 aa5.86□□□□□ -1.47
VPS1YKR001C ALR1Q08269 859 aa5.86□□□□□ -1.47
VPS1YKR001C RTP1Q12751 981 aa5.86□□□□□ -1.47
VPS1YKR001C INH1P01097 85 aa5.85□□□□□ -1.47
VPS1YKR001C RED1P14291 827 aa5.85□□□□□ -1.47
VPS1YKR001C CDC10P25342 322 aaKnown RBP5.85□□□□□ -1.47
VPS1YKR001C TPS2P31688 896 aaKnown RBP5.85□□□□□ -1.47
VPS1YKR001C JNM1P36224 373 aa5.85□□□□□ -1.47
VPS1YKR001C SMC2P38989 1170 aaKnown RBP5.85□□□□□ -1.47
VPS1YKR001C DIP5P53388 608 aa5.85□□□□□ -1.47
VPS1YKR001C ARP5P53946 755 aa5.85□□□□□ -1.47
VPS1YKR001C LCD1Q04377 747 aa5.85□□□□□ -1.47
VPS1YKR001C POB3Q04636 552 aaKnown RBP5.85□□□□□ -1.47
VPS1YKR001C SML1Q04964 104 aa5.85□□□□□ -1.47
VPS1YKR001C YDR286CQ05530 114 aa5.85□□□□□ -1.47
VPS1YKR001C YOR131CQ12486 218 aa5.85□□□□□ -1.47
VPS1YKR001C LSO2Q3E772 92 aaKnown RBP5.85□□□□□ -1.47
VPS1YKR001C ECM29P38737 1868 aa5.85□□□□□ -1.47
VPS1YKR001C TUB2P02557 457 aaKnown RBP5.84□□□□□ -1.47
VPS1YKR001C CIT2P08679 460 aa5.84□□□□□ -1.47
VPS1YKR001C PMA2P19657 947 aa5.84□□□□□ -1.47
VPS1YKR001C MET4P32389 672 aa5.84□□□□□ -1.47
VPS1YKR001C KRE6P32486 720 aa5.84□□□□□ -1.47
VPS1YKR001C RAD24P32641 659 aa5.84□□□□□ -1.47
VPS1YKR001C HCS1P34243 683 aa5.84□□□□□ -1.47
VPS1YKR001C MRP8P35719 219 aa5.84□□□□□ -1.47
VPS1YKR001C PTK1P36002 662 aaPredicted RBP5.84□□□□□ -1.47
VPS1YKR001C ATG3P40344 310 aa5.84□□□□□ -1.47
VPS1YKR001C NUP42P49686 430 aaKnown RBP5.84□□□□□ -1.47
VPS1YKR001C NUP84P52891 726 aa5.84□□□□□ -1.47
VPS1YKR001C ORM1P53224 222 aa5.84□□□□□ -1.47
VPS1YKR001C YNL035CP53962 389 aaKnown RBP5.84□□□□□ -1.47
VPS1YKR001C HAS1Q03532 505 aaKnown RBP5.84□□□□□ -1.47
VPS1YKR001C SRS2P12954 1174 aa5.84□□□□□ -1.47
VPS1YKR001C MAK5P38112 773 aaPredicted RBP5.84□□□□□ -1.47
VPS1YKR001C YHR020WP38708 688 aaKnown RBP5.84□□□□□ -1.47
VPS1YKR001C RTT107P38850 1070 aa5.84□□□□□ -1.47
VPS1YKR001C RGA1P39083 1007 aa5.84□□□□□ -1.47
VPS1YKR001C MNT3P40549 630 aa5.84□□□□□ -1.47
VPS1YKR001C PHB1P40961 287 aa5.84□□□□□ -1.47
VPS1YKR001C ECL1P48235 211 aa5.84□□□□□ -1.47
VPS1YKR001C TRF5P48561 642 aaKnown RBP5.84□□□□□ -1.47
VPS1YKR001C RSC3Q06639 885 aa5.84□□□□□ -1.47
VPS1YKR001C MRN1Q08925 612 aaKnown RBP RIP-Chip data5.84□□□□□ -1.47not detected
VPS1YKR001C RRI2Q12348 645 aa5.84□□□□□ -1.47
VPS1YKR001C RPS3P05750 240 aaKnown RBP5.83□□□□□ -1.48
VPS1YKR001C DIT2P21595 489 aa5.83□□□□□ -1.48
VPS1YKR001C RSC6P25632 483 aa5.83□□□□□ -1.48
VPS1YKR001C BIO2P32451 375 aa5.83□□□□□ -1.48
VPS1YKR001C KAR9P32526 644 aa5.83□□□□□ -1.48
VPS1YKR001C MDL2P33311 773 aa5.83□□□□□ -1.48
VPS1YKR001C RET2P43621 546 aa5.83□□□□□ -1.48
VPS1YKR001C YGR021WP53212 290 aa5.83□□□□□ -1.48
VPS1YKR001C CAF130P53280 1122 aaPredicted RBP5.83□□□□□ -1.48
VPS1YKR001C BUD7Q08754 746 aa5.83□□□□□ -1.48
VPS1YKR001C NOT5Q12514 560 aaPredicted RBP5.83□□□□□ -1.48
VPS1YKR001C MSP1P28737 362 aa5.83□□□□□ -1.48
VPS1YKR001C XRS2P33301 854 aa5.83□□□□□ -1.48
VPS1YKR001C YKL100CP34248 587 aa5.83□□□□□ -1.48
VPS1YKR001C RSM22P36056 628 aa5.83□□□□□ -1.48
VPS1YKR001C CTM1P38818 585 aa5.83□□□□□ -1.48
VPS1YKR001C POP2P39008 433 aa5.83□□□□□ -1.48
VPS1YKR001C HST1P53685 503 aa5.83□□□□□ -1.48
VPS1YKR001C HOS3Q02959 697 aaKnown RBP5.83□□□□□ -1.48
VPS1YKR001C YML108WQ03759 105 aa5.83□□□□□ -1.48
VPS1YKR001C ATG16Q03818 150 aa5.83□□□□□ -1.48
VPS1YKR001C TAF11Q04226 346 aa5.83□□□□□ -1.48
VPS1YKR001C INM2Q05533 292 aa5.83□□□□□ -1.48
VPS1YKR001C CHS5Q12114 671 aaKnown RBP5.83□□□□□ -1.48
VPS1YKR001C SUT2Q12286 268 aa5.83□□□□□ -1.48
VPS1YKR001C ATE1P16639 503 aa5.82□□□□□ -1.48
VPS1YKR001C VAN1P23642 535 aa5.82□□□□□ -1.48
VPS1YKR001C PRP22P24384 1145 aaKnown RBP5.82□□□□□ -1.48
VPS1YKR001C BMH1P29311 267 aaKnown RBP5.82□□□□□ -1.48
VPS1YKR001C PEX6P33760 1030 aa5.82□□□□□ -1.48
VPS1YKR001C STE13P33894 931 aa5.82□□□□□ -1.48
VPS1YKR001C RRN3P36070 627 aa5.82□□□□□ -1.48
VPS1YKR001C ECM4P36156 370 aa5.82□□□□□ -1.48
VPS1YKR001C SNZ3P43545 298 aa5.82□□□□□ -1.48
VPS1YKR001C ATH1P48016 1211 aa5.82□□□□□ -1.48
VPS1YKR001C SNZ2P53824 298 aa5.82□□□□□ -1.48
VPS1YKR001C NSG2P53898 299 aa5.82□□□□□ -1.48
VPS1YKR001C SVF1Q05515 481 aa5.82□□□□□ -1.48
VPS1YKR001C VAM6Q07468 1049 aa5.82□□□□□ -1.48
VPS1YKR001C YDL144CQ07589 356 aa5.82□□□□□ -1.48
VPS1YKR001C PGC1Q08959 321 aa5.82□□□□□ -1.48
VPS1YKR001C MDM20Q12387 796 aaKnown RBP5.82□□□□□ -1.48
VPS1YKR001C AHC1Q12433 566 aa5.82□□□□□ -1.48
VPS1YKR001C CDC37P06101 506 aaKnown RBP5.81□□□□□ -1.48
VPS1YKR001C PGI1P12709 554 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 5,963 RNA–protein pairs in 38 ms