RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	VPS24	P36095	224 aa	Known RBP	4.98	□□□□□ -1.61
CTK1	YKL139W	FUI1	P38196	639 aa		4.98	□□□□□ -1.61
CTK1	YKL139W	DOT6	P40059	670 aa	Known RBP	4.98	□□□□□ -1.61
CTK1	YKL139W	MMM1	P41800	426 aa		4.98	□□□□□ -1.61
CTK1	YKL139W	DUG1	P43616	481 aa	Known RBP	4.98	□□□□□ -1.61
CTK1	YKL139W	NOG2	P53742	486 aa	Known RBP	4.98	□□□□□ -1.61
CTK1	YKL139W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
CTK1	YKL139W	XYL2	Q07993	356 aa		4.98	□□□□□ -1.61
CTK1	YKL139W	SVS1	Q12254	260 aa		4.98	□□□□□ -1.61
CTK1	YKL139W	AI1	P03875	834 aa		4.97	□□□□□ -1.61
CTK1	YKL139W	SST2	P11972	698 aa	Known RBP	4.97	□□□□□ -1.61
CTK1	YKL139W	AEP2	P22136	580 aa		4.97	□□□□□ -1.61
CTK1	YKL139W	MIH1	P23748	554 aa		4.97	□□□□□ -1.61
CTK1	YKL139W	NAM7	P30771	971 aa	Known RBP	4.97	□□□□□ -1.61
CTK1	YKL139W	MDL2	P33311	773 aa		4.97	□□□□□ -1.61
CTK1	YKL139W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
CTK1	YKL139W	VPS72	Q03388	795 aa		4.97	□□□□□ -1.61
CTK1	YKL139W	RSC58	Q07979	502 aa		4.97	□□□□□ -1.61
CTK1	YKL139W	NBA1	Q08229	501 aa	Known RBP	4.97	□□□□□ -1.61
CTK1	YKL139W	URA1	P28272	314 aa	Predicted RBP	4.96	□□□□□ -1.62
CTK1	YKL139W	DAL3	P32459	195 aa		4.96	□□□□□ -1.62
CTK1	YKL139W	YAP1801	P38856	637 aa		4.96	□□□□□ -1.62
CTK1	YKL139W	AKR1	P39010	764 aa		4.96	□□□□□ -1.62
CTK1	YKL139W	RLP7	P40693	322 aa	Known RBP	4.96	□□□□□ -1.62
CTK1	YKL139W	MNN11	P46985	422 aa	Known RBP	4.96	□□□□□ -1.62
CTK1	YKL139W	NIT2	P47016	307 aa		4.96	□□□□□ -1.62
CTK1	YKL139W	YGR153W	P48238	217 aa		4.96	□□□□□ -1.62
CTK1	YKL139W	UBC9	P50623	157 aa	Predicted RBP	4.96	□□□□□ -1.62
CTK1	YKL139W	NOT3	P06102	836 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	CCR4	P31384	837 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	RPC82	P32349	654 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	ECM21	P38167	1117 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	HSL7	P38274	827 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	TDA3	P38758	523 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	GPP2	P40106	250 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	CEP3	P40969	608 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	CIT3	P43635	486 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	PRY1	P47032	299 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	ECM16	Q04217	1267 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	YBR182C-A	Q8TGU6	64 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	PIF1	P07271	859 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	CYS3	P31373	394 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	SAP190	P36123	1033 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	CCT5	P40413	562 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	SHR5	P41912	237 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	RET2	P43621	546 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	ARI1	P53111	347 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	HDA1	P53973	706 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	ECM9	Q02202	377 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	VMS1	Q04311	632 aa	Known RBP	4.95	□□□□□ -1.62
CTK1	YKL139W	RMP1	Q12530	201 aa		4.95	□□□□□ -1.62
CTK1	YKL139W	RPS9A	O13516	197 aa	Known RBP	4.94	□□□□□ -1.62
CTK1	YKL139W	DIF1	O13577	133 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	TRX2	P22803	104 aa	Known RBP	4.94	□□□□□ -1.62
CTK1	YKL139W	AIM26	P32858	118 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	RCM1	P53972	490 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	MET14	Q02196	202 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	CEF1	Q03654	590 aa	Predicted RBP	4.94	□□□□□ -1.62
CTK1	YKL139W	ATG16	Q03818	150 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	CRR1	Q05790	422 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	TDA6	Q06466	467 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	YOR059C	Q08448	450 aa	Known RBP	4.94	□□□□□ -1.62
CTK1	YKL139W	THI72	Q08579	599 aa		4.94	□□□□□ -1.62
CTK1	YKL139W	ENA1	P13587	1091 aa		4.93	□□□□□ -1.62
CTK1	YKL139W	HSP78	P33416	811 aa		4.93	□□□□□ -1.62
CTK1	YKL139W	DID4	P36108	232 aa		4.93	□□□□□ -1.62
CTK1	YKL139W	RFC5	P38251	354 aa		4.93	□□□□□ -1.62
CTK1	YKL139W	MCX1	P38323	520 aa	Predicted RBP	4.93	□□□□□ -1.62
CTK1	YKL139W	PIP2	P52960	996 aa		4.93	□□□□□ -1.62
CTK1	YKL139W	ENA2	Q01896	1091 aa		4.93	□□□□□ -1.62
CTK1	YKL139W	ENA5	Q12691	1091 aa		4.93	□□□□□ -1.62
CTK1	YKL139W	PRC1	P00729	532 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	STE13	P33894	931 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	NIC96	P34077	839 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	YKR051W	P36142	418 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	SET5	P38890	526 aa	Known RBP	4.92	□□□□□ -1.62
CTK1	YKL139W	PEX7	P39108	375 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	OYE3	P41816	400 aa	Predicted RBP	4.92	□□□□□ -1.62
CTK1	YKL139W	YFL066C	P43538	392 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	RAI1	P53063	387 aa	Known RBP	4.92	□□□□□ -1.62
CTK1	YKL139W	NPY1	P53164	384 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	PBP1	P53297	722 aa	Known RBP	4.92	□□□□□ -1.62
CTK1	YKL139W	YKR011C	Q02209	353 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	RIP-Chip
CTK1	YKL139W	TRE1	Q08919	783 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	YOR022C	Q12204	715 aa		4.92	□□□□□ -1.62
CTK1	YKL139W	GAL1	P04385	528 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	APL1	P27351	700 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	RPD3	P32561	433 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	ABZ1	P37254	787 aa	Predicted RBP	4.91	□□□□□ -1.62
CTK1	YKL139W	BIT2	P38346	545 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	PTC7	P38797	343 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	GTS1	P40956	396 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	YFL052W	P43551	465 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	UBX4	P54730	416 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	VPS30	Q02948	557 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	PHM6	Q05637	104 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	Q0142	Q9ZZW4	58 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	SPS1	P08458	490 aa		4.91	□□□□□ -1.62
CTK1	YKL139W	RPS21A	P0C0V8	87 aa	Known RBP	4.91	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms