RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	RAD18	P10862	487 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	KAR2	P16474	682 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	MIH1	P23748	554 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	PRP19	P32523	503 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	YKL050C	P35736	922 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	YBR238C	P38330	731 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	PEX28	P38848	579 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	YHR218W	P38899	603 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	PRP43	P53131	767 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	CAF120	P53836	1060 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	TDA9	Q04545	1251 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	YLR257W	Q06146	321 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	SPS1	P08458	490 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	RPS21A	P0C0V8	87 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	UTR2	P32623	467 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	BIT2	P38346	545 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	CKB2	P38930	258 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	DUN1	P39009	513 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	QDR2	P40474	542 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	DPH1	P40487	425 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	ARC35	P53731	342 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	ECM9	Q02202	377 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	NOG1	Q02892	647 aa	Known RBP	4.21	□□□□□ -1.74
NUP85	YJR042W	ERO1	Q03103	563 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	RCF1	Q03713	159 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	SGD1	Q06132	899 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	OPY2	Q06810	360 aa		4.21	□□□□□ -1.74
NUP85	YJR042W	ESL2	P36168	1195 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	RIM11	P38615	370 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	LSM5	P40089	93 aa	Known RBP	4.2	□□□□□ -1.74
NUP85	YJR042W	IRC6	P43615	237 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	PEX29	Q03370	554 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	YTM1	Q12024	460 aa	Predicted RBP	4.2	□□□□□ -1.74
NUP85	YJR042W	YOL114C	Q12322	202 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	SCM3	Q12334	223 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	PDR11	P40550	1411 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	TRM3	Q07527	1436 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	IML1	P47170	1584 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	NUP192	P47054	1683 aa		4.2	□□□□□ -1.74
NUP85	YJR042W	RPS31	P05759	152 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	RPC31	P17890	251 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	SEC18	P18759	758 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	PYC2	P32327	1180 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	CBF2	P32504	956 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	SEC61	P32915	480 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	LDH1	P38139	375 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	HXT6	P39003	570 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	HXT7	P39004	570 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	SBE2	P42223	864 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	GZF3	P42944	551 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	RMD8	P43620	662 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	TAD1	P53065	400 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	RRT6	P53117	311 aa	Predicted RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	BTN2	P53286	410 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	PDS5	Q04264	1277 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	PUS1	Q12211	544 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	TOM70	P07213	617 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	PRP9	P19736	530 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	RPC53	P25441	422 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	MLF3	P32047	452 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	GCD11	P32481	527 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	PAH1	P32567	862 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	PET10	P36139	283 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	SAH1	P39954	449 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	LTP1	P40347	161 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	YGL176C	P46945	554 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	SAS4	Q04003	481 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	YDR344C	Q05510	147 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	HEL2	Q05580	639 aa	Known RBP	4.19	□□□□□ -1.74
NUP85	YJR042W	DRS2	P39524	1355 aa		4.19	□□□□□ -1.74
NUP85	YJR042W	YER152C	P10356	443 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	FBP26	P32604	452 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	PEX5	P35056	612 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	SHM2	P37291	469 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	RVS167	P39743	482 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	NOP16	P40007	231 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	CCT5	P40413	562 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	IMA5	P40884	581 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	GYP8	P43570	497 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	AIM14	P53109	570 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	ARE2	P53629	642 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	RAT1	Q02792	1006 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	PML39	Q03760	334 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	YDR341C	Q05506	607 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	UTP4	Q06679	776 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	YPR015C	Q12531	247 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	Q0182	Q9ZZW1	134 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	HSF1	P10961	833 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	HMG1	P12683	1054 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	MSH3	P25336	1018 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	CDC60	P26637	1090 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	SAS3	P34218	831 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	YEL1	P34225	687 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	AXL2	P38928	823 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	SPC72	P39723	622 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	RIC1	P40395	1056 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	MNN11	P46985	422 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	PAP2	P53632	584 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	SPC19	Q03954	165 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	UTP21	Q06078	939 aa	Predicted RBP	4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 40.2 ms