RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 PRP16P15938 1071 aaPredicted RBP9.32□□□□□ -0.92
LSR1LSR1 PRE10P21242 288 aaKnown RBP RIP-Chip data9.32□□□□□ -0.92not detected
LSR1LSR1 RAD54P32863 898 aa9.32□□□□□ -0.92
LSR1LSR1 YKL050CP35736 922 aa9.32□□□□□ -0.92
LSR1LSR1 TRZ1P36159 838 aaPredicted RBP9.32□□□□□ -0.92
LSR1LSR1 YSW1P38280 609 aa9.32□□□□□ -0.92
LSR1LSR1 NMD5P46970 1048 aa9.32□□□□□ -0.92
LSR1LSR1 SOL4P53315 255 aa9.32□□□□□ -0.92
LSR1LSR1 YMR187CQ03236 431 aa9.32□□□□□ -0.92
LSR1LSR1 YDR278CQ05612 105 aa9.32□□□□□ -0.92
LSR1LSR1 PHO8P11491 566 aa9.31□□□□□ -0.92
LSR1LSR1 SUV3P32580 737 aa9.31□□□□□ -0.92
LSR1LSR1 UBC6P33296 250 aaPredicted RBP9.31□□□□□ -0.92
LSR1LSR1 PGM1P33401 570 aaKnown RBP9.31□□□□□ -0.92
LSR1LSR1 BLI1P35727 113 aa9.31□□□□□ -0.92
LSR1LSR1 MMS21P38632 267 aa9.31□□□□□ -0.92
LSR1LSR1 SHC1P39000 512 aa9.31□□□□□ -0.92
LSR1LSR1 CCT2P39076 527 aaKnown RBP9.31□□□□□ -0.92
LSR1LSR1 LCP5P40079 357 aaPredicted RBP9.31□□□□□ -0.92
LSR1LSR1 CRF1Q04930 467 aa9.31□□□□□ -0.92
LSR1LSR1 RLP24Q07915 199 aaKnown RBP9.31□□□□□ -0.92
LSR1LSR1 AIM41Q12032 185 aa9.31□□□□□ -0.92
LSR1LSR1 OAF3P36023 863 aa9.3□□□□□ -0.92
LSR1LSR1 PHO88P38264 188 aaPredicted RBP9.3□□□□□ -0.92
LSR1LSR1 MRX1P40050 688 aa9.3□□□□□ -0.92
LSR1LSR1 RIO2P40160 425 aaKnown RBP9.3□□□□□ -0.92
LSR1LSR1 YMR1P47147 688 aaKnown RBP RIP-Chip data9.3□□□□□ -0.92not detected
LSR1LSR1 COS5P47187 383 aa9.3□□□□□ -0.92
LSR1LSR1 BRO1P48582 844 aa9.3□□□□□ -0.92
LSR1LSR1 ENV11P53246 860 aa9.3□□□□□ -0.92
LSR1LSR1 USA1Q03714 838 aa9.3□□□□□ -0.92
LSR1LSR1 YDR338CQ05497 695 aa9.3□□□□□ -0.92
LSR1LSR1 PIG1Q06216 648 aa9.3□□□□□ -0.92
LSR1LSR1 YLR462WO13556 202 aa9.29□□□□□ -0.92
LSR1LSR1 CDC10P25342 322 aaKnown RBP9.29□□□□□ -0.92
LSR1LSR1 YCR051WP25631 222 aa9.29□□□□□ -0.92
LSR1LSR1 CAP1P28495 268 aaKnown RBP9.29□□□□□ -0.92
LSR1LSR1 CDC11P32458 415 aa9.29□□□□□ -0.92
LSR1LSR1 YHL049CP38722 271 aa9.29□□□□□ -0.92
LSR1LSR1 YEL075CP39972 122 aa9.29□□□□□ -0.92
LSR1LSR1 YER189WP40104 122 aa9.29□□□□□ -0.92
LSR1LSR1 SMX2P40204 77 aaKnown RBP9.29□□□□□ -0.92
LSR1LSR1 FIS1P40515 155 aa9.29□□□□□ -0.92
LSR1LSR1 YFL064CP43540 174 aa9.29□□□□□ -0.92
LSR1LSR1 VPS70P47161 811 aa9.29□□□□□ -0.92
LSR1LSR1 CNM67P53865 581 aaKnown RBP9.29□□□□□ -0.92
LSR1LSR1 TIM8P57744 87 aa9.29□□□□□ -0.92
LSR1LSR1 YML082WQ04533 649 aaKnown RBP9.29□□□□□ -0.92
LSR1LSR1 TMA64Q04600 565 aaKnown RBP9.29□□□□□ -0.92
LSR1LSR1 YDL206WQ12424 762 aa9.29□□□□□ -0.92
LSR1LSR1 YBL111CQ3E7Y5 667 aa9.29□□□□□ -0.92
LSR1LSR1 PGK1P00560 416 aaKnown RBP9.28□□□□□ -0.92
LSR1LSR1 CHS2P14180 963 aa9.28□□□□□ -0.92
LSR1LSR1 KIP1P28742 1111 aa9.28□□□□□ -0.92
LSR1LSR1 YSC83P32792 385 aa9.28□□□□□ -0.92
LSR1LSR1 SQT1P35184 431 aa9.28□□□□□ -0.92
LSR1LSR1 EXO5P38289 585 aa9.28□□□□□ -0.92
LSR1LSR1 SAP185P40856 1058 aa9.28□□□□□ -0.92
LSR1LSR1 URB2P47108 1174 aa9.28□□□□□ -0.92
LSR1LSR1 LIF1P53150 421 aa9.28□□□□□ -0.92
LSR1LSR1 MTG1Q03151 367 aaPredicted RBP9.28□□□□□ -0.92
LSR1LSR1 PNP1Q05788 311 aa9.28□□□□□ -0.92
LSR1LSR1 ERG12P07277 443 aa9.27□□□□□ -0.93
LSR1LSR1 SWI6P09959 803 aa9.27□□□□□ -0.93
LSR1LSR1 RAD18P10862 487 aa9.27□□□□□ -0.93
LSR1LSR1 PLC1P32383 869 aa9.27□□□□□ -0.93
LSR1LSR1 GCD6P32501 712 aaKnown RBP9.27□□□□□ -0.93
LSR1LSR1 TGL1P34163 548 aa9.27□□□□□ -0.93
LSR1LSR1 UBP13P38187 747 aa9.27□□□□□ -0.93
LSR1LSR1 RRT2P38332 387 aa9.27□□□□□ -0.93
LSR1LSR1 HIS2P38635 335 aa9.27□□□□□ -0.93
LSR1LSR1 RPN3P40016 523 aaKnown RBP9.27□□□□□ -0.93
LSR1LSR1 KAP123P40069 1113 aaKnown RBP9.27□□□□□ -0.93
LSR1LSR1 YER156CP40093 338 aaKnown RBP9.27□□□□□ -0.93
LSR1LSR1 CTR1P49573 406 aa9.27□□□□□ -0.93
LSR1LSR1 YGL039WP53183 348 aaKnown RBP9.27□□□□□ -0.93
LSR1LSR1 JJJ1P53863 590 aa9.27□□□□□ -0.93
LSR1LSR1 NCS2P53923 493 aaPredicted RBP9.27□□□□□ -0.93
LSR1LSR1 SEN54Q02825 467 aaPredicted RBP9.27□□□□□ -0.93
LSR1LSR1 TAF9Q05027 157 aa9.27□□□□□ -0.93
LSR1LSR1 DON1Q05610 365 aa9.27□□□□□ -0.93
LSR1LSR1 PHM6Q05637 104 aa9.27□□□□□ -0.93
LSR1LSR1 SNF1P06782 633 aaKnown RBP9.26□□□□□ -0.93
LSR1LSR1 SPT2P06843 333 aaPredicted RBP9.26□□□□□ -0.93
LSR1LSR1 RPB2P08518 1224 aaKnown RBP9.26□□□□□ -0.93
LSR1LSR1 ADH4P10127 382 aa9.26□□□□□ -0.93
LSR1LSR1 TCP1P12612 559 aaKnown RBP9.26□□□□□ -0.93
LSR1LSR1 PEP5P12868 1029 aa9.26□□□□□ -0.93
LSR1LSR1 PMR1P13586 950 aa9.26□□□□□ -0.93
LSR1LSR1 ILV6P25605 309 aaKnown RBP9.26□□□□□ -0.93
LSR1LSR1 SEC21P32074 935 aaKnown RBP9.26□□□□□ -0.93
LSR1LSR1 EUG1P32474 517 aa9.26□□□□□ -0.93
LSR1LSR1 VPS35P34110 944 aa9.26□□□□□ -0.93
LSR1LSR1 TRM44Q02648 567 aaKnown RBP9.26□□□□□ -0.93
LSR1LSR1 FRA1Q07825 749 aa9.26□□□□□ -0.93
LSR1LSR1 RKM4Q12504 494 aa9.26□□□□□ -0.93
LSR1LSR1 GAP1P19145 602 aaPredicted RBP9.25□□□□□ -0.93
LSR1LSR1 SWI3P32591 825 aa9.25□□□□□ -0.93
LSR1LSR1 YME1P32795 747 aa9.25□□□□□ -0.93
LSR1LSR1 SWH1P35845 1188 aa9.25□□□□□ -0.93
Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms