RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 SLU7O95391 586 aaKnown RBP9.91□□□□□ -0.82
CSMD1-213ENST00000523488 CCDC192P0DO97 292 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 NBPF11Q86T75 865 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 FCHSD1Q86WN1 690 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 CBX8Q9HC52 389 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 ZNF215Q9UL58 517 aaPredicted RBP9.91□□□□□ -0.82
CSMD1-213ENST00000523488 CASQ1P31415 396 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 MBIPQ9NS73 344 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 NWD2Q9ULI1 1742 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 FANCGO15287 622 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 TADA3O75528 432 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 TBC1D8O95759 1140 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 NAA30Q147X3 362 aaPredicted RBP9.9□□□□□ -0.82
CSMD1-213ENST00000523488 ICE2Q659A1 982 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 RUFY3Q7L099 469 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 OTUD7AQ8TE49 926 aaPredicted RBP9.9□□□□□ -0.82
CSMD1-213ENST00000523488 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.9□□□□□ -0.82
CSMD1-213ENST00000523488 LAMB4A4D0S4 1761 aa9.9□□□□□ -0.82
CSMD1-213ENST00000523488 STX6O43752 255 aa9.9□□□□□ -0.83
CSMD1-213ENST00000523488 SYT1P21579 422 aa9.9□□□□□ -0.83
CSMD1-213ENST00000523488 MCCP23508 829 aa9.9□□□□□ -0.83
CSMD1-213ENST00000523488 TYRO3Q06418 890 aa9.9□□□□□ -0.83
CSMD1-213ENST00000523488 HYPKQ9NX55 129 aa9.9□□□□□ -0.83
CSMD1-213ENST00000523488 ORC3Q9UBD5 711 aaPredicted RBP9.9□□□□□ -0.83
CSMD1-213ENST00000523488 RSPH14Q9UHP6 348 aa9.9□□□□□ -0.83
CSMD1-213ENST00000523488 CLCN6P51797 869 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 GTF2A1P52655 376 aaPredicted RBP9.89□□□□□ -0.83
CSMD1-213ENST00000523488 CCDC158Q5M9N0 1113 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 TRIM65Q6PJ69 517 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 SRRTQ9BXP5 876 aaKnown RBP9.89□□□□□ -0.83
CSMD1-213ENST00000523488 DDX19AQ9NUU7 478 aaKnown RBP9.89□□□□□ -0.83
CSMD1-213ENST00000523488 CNPY2Q9Y2B0 182 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 ATP6V1DQ9Y5K8 247 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 A2ML1A8K2U0 1454 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 KDRP35968 1356 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 SGSM2O43147 1006 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 ESF1Q9H501 851 aaKnown RBP9.89□□□□□ -0.83
CSMD1-213ENST00000523488 RFX7Q2KHR2 1363 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 CHL1O00533 1208 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 GPS2Q13227 327 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 VPS53Q5VIR6 699 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 C16orf71Q8IYS4 520 aaPredicted RBP9.89□□□□□ -0.83
CSMD1-213ENST00000523488 TSPYL6Q8N831 410 aa9.89□□□□□ -0.83
CSMD1-213ENST00000523488 GOLGA6L1Q8N7Z2 621 aa9.88□□□□□ -0.83
CSMD1-213ENST00000523488 RASSF4Q9H2L5 321 aa9.88□□□□□ -0.83
CSMD1-213ENST00000523488 ZSCAN16Q9H4T2 348 aaPredicted RBP9.88□□□□□ -0.83
CSMD1-213ENST00000523488 ZSWIM6Q9HCJ5 1215 aa9.88□□□□□ -0.83
CSMD1-213ENST00000523488 USP31Q70CQ4 1352 aa9.88□□□□□ -0.83
CSMD1-213ENST00000523488 FER1L4A9Z1Z3 1794 aa9.88□□□□□ -0.83
CSMD1-213ENST00000523488 POLA2Q14181 598 aa9.88□□□□□ -0.83
CSMD1-213ENST00000523488 CCDC186Q7Z3E2 898 aa9.88□□□□□ -0.83
CSMD1-213ENST00000523488 DHX40Q8IX18 779 aaKnown RBP9.88□□□□□ -0.83
CSMD1-213ENST00000523488 C21orf2O43822 256 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 SRPK2P78362 688 aaKnown RBP9.87□□□□□ -0.83
CSMD1-213ENST00000523488 PI4K2BQ8TCG2 481 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 CEP89Q96ST8 783 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 TRIM5Q9C035 493 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 SH2B1Q9NRF2 756 aaPredicted RBP9.87□□□□□ -0.83
CSMD1-213ENST00000523488 RAB21Q9UL25 225 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 NPHP3Q7Z494 1330 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 PSME1Q06323 249 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 E4F1Q66K89 784 aaPredicted RBP9.87□□□□□ -0.83
CSMD1-213ENST00000523488 GIMAP6Q6P9H5 292 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 SNX14Q9Y5W7 946 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 IL25Q9H293 177 aa9.87□□□□□ -0.83
CSMD1-213ENST00000523488 CWC15Q9P013 229 aaKnown RBP9.87□□□□□ -0.83
CSMD1-213ENST00000523488 USP27XA6NNY8 438 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 MYO1CO00159 1063 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 FIBPO43427 364 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 SASH3O75995 380 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 TPM1P09493 284 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 MAGEA9P43362 315 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 EFCAB2Q5VUJ9 269 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 C10orf67Q8IYJ2 551 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 XAGE2Q96GT9 111 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 ALS2Q96Q42 1657 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 EFCAB8A8MWE9 144 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 KIF3BO15066 747 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 SF3B2Q13435 895 aaKnown RBP9.86□□□□□ -0.83
CSMD1-213ENST00000523488 ZNF622Q969S3 477 aaKnown RBP eCLIP9.86□□□□□ -0.831e-6■□□□□ 10.8
CSMD1-213ENST00000523488 ZSCAN31Q96LW9 406 aaPredicted RBP9.86□□□□□ -0.83
CSMD1-213ENST00000523488 SLC52A1Q9NWF4 448 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 POLR3GO15318 223 aaPredicted RBP9.86□□□□□ -0.83
CSMD1-213ENST00000523488 KIF1CO43896 1103 aaKnown RBP9.86□□□□□ -0.83
CSMD1-213ENST00000523488 SHOX2O60902 331 aaPredicted RBP9.86□□□□□ -0.83
CSMD1-213ENST00000523488 ADD1P35611 737 aaKnown RBP9.86□□□□□ -0.83
CSMD1-213ENST00000523488 C11orf91Q3C1V1 193 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 ENGASEQ8NFI3 743 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 PAGR1Q9BTK6 254 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 HDAC5Q9UQL6 1122 aa9.86□□□□□ -0.83
CSMD1-213ENST00000523488 ATP2B1P20020 1258 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 LRMPQ12912 555 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 TTC6Q86TZ1 520 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 GTF3C6Q969F1 213 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 CHMP4CQ96CF2 233 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 FUT8Q9BYC5 575 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 MYO1BO43795 1136 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 DIAPH1O60610 1272 aaKnown RBP9.85□□□□□ -0.83
CSMD1-213ENST00000523488 GSDMDP57764 484 aa9.85□□□□□ -0.83
CSMD1-213ENST00000523488 TPM4P67936 248 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms