RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 STAU1O95793 577 aaKnown RBP3.23□□□□□ -1.89
UBXN4-207ENST00000471246 JUNBP17275 347 aaPredicted RBP3.23□□□□□ -1.89
UBXN4-207ENST00000471246 SFSWAPQ12872 951 aaKnown RBP3.23□□□□□ -1.89
UBXN4-207ENST00000471246 SEMA3FQ13275 785 aa3.23□□□□□ -1.89
UBXN4-207ENST00000471246 COL19A1Q14993 1142 aa3.23□□□□□ -1.89
UBXN4-207ENST00000471246 KRTAP19-4Q3LI73 84 aa3.23□□□□□ -1.89
UBXN4-207ENST00000471246 OXLD1Q5BKU9 147 aa3.23□□□□□ -1.89
UBXN4-207ENST00000471246 IGF2-ASQ6U949 168 aa3.23□□□□□ -1.89
UBXN4-207ENST00000471246 RAB44Q7Z6P3 723 aaPredicted RBP3.23□□□□□ -1.89
UBXN4-207ENST00000471246 WWC1Q8IX03 1113 aa3.23□□□□□ -1.89
UBXN4-207ENST00000471246 PHTF2Q8N3S3 785 aa3.23□□□□□ -1.89
UBXN4-207ENST00000471246 ESF1Q9H501 851 aaKnown RBP3.23□□□□□ -1.89
UBXN4-207ENST00000471246 POM121CA8CG34 1229 aa3.22□□□□□ -1.89
UBXN4-207ENST00000471246 PIK3CDO00329 1044 aa3.22□□□□□ -1.89
UBXN4-207ENST00000471246 TSGA10IPQ3SY00 556 aa3.22□□□□□ -1.89
UBXN4-207ENST00000471246 PLPP7Q8NBV4 271 aa3.22□□□□□ -1.89
UBXN4-207ENST00000471246 AKTIPQ9H8T0 292 aa3.22□□□□□ -1.89
UBXN4-207ENST00000471246 CHIC2Q9UKJ5 165 aa3.22□□□□□ -1.89
UBXN4-207ENST00000471246 TLR1Q15399 786 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 DTWD1Q8N5C7 304 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 ADAMTS19Q8TE59 1207 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 CLUAP1Q96AJ1 413 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 ALG2Q9H553 416 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 ETNK1Q9HBU6 452 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 STOML1Q9UBI4 398 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 GJA3Q9Y6H8 435 aa3.21□□□□□ -1.9
UBXN4-207ENST00000471246 SKIP12755 728 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 NFIAQ12857 509 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 USP4Q13107 963 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 MAP7D1Q3KQU3 841 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 ESCO1Q5FWF5 840 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 MSL1Q68DK7 614 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 NFXL1Q6ZNB6 911 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 PROSER2Q86WR7 435 aaPredicted RBP3.2□□□□□ -1.9
UBXN4-207ENST00000471246 CILP2Q8IUL8 1156 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 ZNF295-AS1Q8N0V1 137 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 SIRT1Q96EB6 747 aa3.2□□□□□ -1.9
UBXN4-207ENST00000471246 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.2□□□□□ -1.9
UBXN4-207ENST00000471246 USP17L5A8MUK1 530 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 F8W735 103 aaPredicted RBP3.19□□□□□ -1.9
UBXN4-207ENST00000471246 DEAF1O75398 565 aaPredicted RBP3.19□□□□□ -1.9
UBXN4-207ENST00000471246 HOXA10P31260 410 aaPredicted RBP3.19□□□□□ -1.9
UBXN4-207ENST00000471246 SCNN1DP51172 638 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 SPEM2Q0P670 501 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 NCOA4Q13772 614 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 EML3Q32P44 896 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 PSAPL1Q6NUJ1 521 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 NFATC2IPQ8NCF5 419 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 UCN2Q96RP3 112 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 NIFKQ9BYG3 293 aaKnown RBP3.19□□□□□ -1.9
UBXN4-207ENST00000471246 SLC6A14Q9UN76 642 aa3.19□□□□□ -1.9
UBXN4-207ENST00000471246 DLL1O00548 723 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 PSPNO60542 156 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 FARP2O94887 1054 aaPredicted RBP3.18□□□□□ -1.9
UBXN4-207ENST00000471246 PAPLNO95428 1278 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 TATP17735 454 aaPredicted RBP3.18□□□□□ -1.9
UBXN4-207ENST00000471246 GDF10P55107 478 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 GRIK5Q16478 980 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 Q6ZS46 218 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 DEPDC4Q8N2C3 294 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 TMEM130Q8N3G9 435 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 FNBP4Q8N3X1 1017 aaPredicted RBP3.18□□□□□ -1.9
UBXN4-207ENST00000471246 GLMNQ92990 594 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 CSRNP1Q96S65 589 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 ZDHHC3Q9NYG2 299 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 NAGPAQ9UK23 515 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 NOD1Q9Y239 953 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 CARMIL2Q6F5E8 1435 aa3.18□□□□□ -1.9
UBXN4-207ENST00000471246 USP17L3A6NCW0 530 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 USP17L4A6NCW7 530 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 TMEM229AB2RXF0 380 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 ATP9BO43861 1147 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 INHAP05111 366 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 GTF2IP78347 998 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 PSME1Q06323 249 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 TBC1D8BQ0IIM8 1120 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 PKN1Q16512 942 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 NBPF1Q3BBV0 1214 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 HDGFL1Q5TGJ6 251 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 RNF43Q68DV7 783 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 USP17L2Q6R6M4 530 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 LCNL1Q6ZST4 164 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 TTLL10Q6ZVT0 673 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 USP17L1Q7RTZ2 530 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 PLEKHM2Q8IWE5 1019 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 ARMC10Q8N2F6 343 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 UBL7Q96S82 380 aaPredicted RBP3.17□□□□□ -1.9
UBXN4-207ENST00000471246 PCDHGA11Q9Y5H2 935 aa3.17□□□□□ -1.9
UBXN4-207ENST00000471246 A6NJR5 290 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 LZTS3O60299 673 aaPredicted RBP3.16□□□□□ -1.9
UBXN4-207ENST00000471246 RGS9O75916 674 aaPredicted RBP3.16□□□□□ -1.9
UBXN4-207ENST00000471246 NEUROD1Q13562 356 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 LRRC69Q6ZNQ3 347 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 BICDL1Q6ZP65 573 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 C1QL4Q86Z23 238 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 TRIM42Q8IWZ5 723 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 AGGF1Q8N302 714 aaeCLIP3.16□□□□□ -1.95e-13■□□□□ 8.4
UBXN4-207ENST00000471246 SHKBP1Q8TBC3 707 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 DBNDD2Q9BQY9 259 aa3.16□□□□□ -1.9
UBXN4-207ENST00000471246 UBE2OQ9C0C9 1292 aaKnown RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms