RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 RRAGDQ9NQL2 400 aaPredicted RBP8.78□□□□□ -1
CSDE1-204ENST00000369530 BTBD11A6QL63 1104 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 A1BGP04217 495 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 IGKV5-2P06315 115 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 DUSP27Q5VZP5 1158 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 TSPYL6Q8N831 410 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 FRAT1Q92837 279 aaPredicted RBP8.78□□□□□ -1
CSDE1-204ENST00000369530 THUMPD2Q9BTF0 503 aaKnown RBP8.78□□□□□ -1
CSDE1-204ENST00000369530 PDCL3Q9H2J4 239 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 ZBED9Q6R2W3 1325 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 KRT24Q2M2I5 525 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 STYK1Q6J9G0 422 aa8.78□□□□□ -1
CSDE1-204ENST00000369530 HSP90AA1P07900 732 aaKnown RBP8.77□□□□□ -1
CSDE1-204ENST00000369530 GIGYF2Q6Y7W6 1299 aaKnown RBP8.77□□□□□ -1
CSDE1-204ENST00000369530 POLR2AP24928 1970 aaKnown RBP8.77□□□□□ -1.01
CSDE1-204ENST00000369530 ZBTB7AO95365 584 aa8.77□□□□□ -1.01
CSDE1-204ENST00000369530 DDX21Q9NR30 783 aaKnown RBP eCLIP8.77□□□□□ -1.01
CSDE1-204ENST00000369530 SLFN5Q08AF3 891 aa8.77□□□□□ -1.01
CSDE1-204ENST00000369530 CSF1RP07333 972 aa8.76□□□□□ -1.01
CSDE1-204ENST00000369530 COL1A1P02452 1464 aaPredicted RBP8.76□□□□□ -1.01
CSDE1-204ENST00000369530 USPL1Q5W0Q7 1092 aa8.76□□□□□ -1.01
CSDE1-204ENST00000369530 NLGN1Q8N2Q7 840 aa8.76□□□□□ -1.01
CSDE1-204ENST00000369530 TTLL7Q6ZT98 887 aa8.76□□□□□ -1.01
CSDE1-204ENST00000369530 PGAP2Q9UHJ9 254 aa8.76□□□□□ -1.01
CSDE1-204ENST00000369530 RFX7Q2KHR2 1363 aa8.75□□□□□ -1.01
CSDE1-204ENST00000369530 FRMPD3Q5JV73 1810 aa8.75□□□□□ -1.01
CSDE1-204ENST00000369530 GNPATO15228 680 aa8.75□□□□□ -1.01
CSDE1-204ENST00000369530 SF3B3Q15393 1217 aaKnown RBP8.75□□□□□ -1.01
CSDE1-204ENST00000369530 C1orf141Q5JVX7 400 aa8.75□□□□□ -1.01
CSDE1-204ENST00000369530 BRIP1Q9BX63 1249 aa8.75□□□□□ -1.01
CSDE1-204ENST00000369530 TCERG1O14776 1098 aaKnown RBP8.74□□□□□ -1.01
CSDE1-204ENST00000369530 NFKBIBQ15653 356 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 TRAPPC3LQ5T215 181 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 L3MBTL3Q96JM7 780 aaPredicted RBP8.74□□□□□ -1.01
CSDE1-204ENST00000369530 KIF3CO14782 793 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 DDRGK1Q96HY6 314 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 ABCC4O15439 1325 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 H7C1W4 665 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 RIPK4P57078 832 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 SF3B2Q13435 895 aaKnown RBP8.74□□□□□ -1.01
CSDE1-204ENST00000369530 RABL6Q3YEC7 729 aaPredicted RBP8.74□□□□□ -1.01
CSDE1-204ENST00000369530 C15orf52Q6ZUT6 534 aaKnown RBP8.74□□□□□ -1.01
CSDE1-204ENST00000369530 NLRP10Q86W26 655 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 CFAP53Q96M91 514 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 RTCBQ9Y3I0 505 aaKnown RBP8.74□□□□□ -1.01
CSDE1-204ENST00000369530 PASKQ96RG2 1323 aa8.74□□□□□ -1.01
CSDE1-204ENST00000369530 MGAMO43451 1857 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 TPM2P07951 284 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 SUSD4Q5VX71 490 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 PDZRN3Q9UPQ7 1066 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 FZD9O00144 591 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 U2AF1L5P0DN76 240 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-204ENST00000369530 U2AF1Q01081 240 aaKnown RBP eCLIP8.73□□□□□ -1.01
CSDE1-204ENST00000369530 B4GALNT3Q6L9W6 998 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 VGLL2Q8N8G2 317 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 AK7Q96M32 723 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 VPS33BQ9H267 617 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 DOCK1Q14185 1865 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 MMP10P09238 476 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 FOXO4P98177 505 aa8.73□□□□□ -1.01
CSDE1-204ENST00000369530 ZBED3Q96IU2 234 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-204ENST00000369530 IRX6P78412 446 aaPredicted RBP8.72□□□□□ -1.01
CSDE1-204ENST00000369530 PSMD1Q99460 953 aa8.72□□□□□ -1.01
CSDE1-204ENST00000369530 BACH2Q9BYV9 841 aa8.72□□□□□ -1.01
CSDE1-204ENST00000369530 MIS18AQ9NYP9 233 aa8.72□□□□□ -1.01
CSDE1-204ENST00000369530 A0A087WZG4 1122 aa8.72□□□□□ -1.01
CSDE1-204ENST00000369530 PNNQ9H307 717 aaKnown RBP8.72□□□□□ -1.01
CSDE1-204ENST00000369530 LRRC37A2A6NM11 1700 aa8.72□□□□□ -1.01
CSDE1-204ENST00000369530 A0A0U1RQG5 324 aaPredicted RBP8.72□□□□□ -1.01
CSDE1-204ENST00000369530 DPEP1P16444 411 aa8.72□□□□□ -1.01
CSDE1-204ENST00000369530 MRPL50Q8N5N7 158 aaKnown RBP8.72□□□□□ -1.01
CSDE1-204ENST00000369530 IPO4Q8TEX9 1081 aaKnown RBP8.72□□□□□ -1.01
CSDE1-204ENST00000369530 RFX5P48382 616 aaPredicted RBP8.71□□□□□ -1.01
CSDE1-204ENST00000369530 TERF1P54274 439 aa8.71□□□□□ -1.01
CSDE1-204ENST00000369530 BEND3Q5T5X7 828 aa8.71□□□□□ -1.01
CSDE1-204ENST00000369530 UTP14CQ5TAP6 766 aaKnown RBP8.71□□□□□ -1.01
CSDE1-204ENST00000369530 PLBD2Q8NHP8 589 aa8.71□□□□□ -1.01
CSDE1-204ENST00000369530 NUDCQ9Y266 331 aa8.71□□□□□ -1.01
CSDE1-204ENST00000369530 APAF1O14727 1248 aa8.71□□□□□ -1.02
CSDE1-204ENST00000369530 SMAP1Q8IYB5 467 aaPredicted RBP8.71□□□□□ -1.02
CSDE1-204ENST00000369530 DNAJC5GQ8N7S2 189 aa8.71□□□□□ -1.02
CSDE1-204ENST00000369530 CRAMP1Q96RY5 1269 aa8.71□□□□□ -1.02
CSDE1-204ENST00000369530 TFCP2L1Q9NZI6 479 aa8.71□□□□□ -1.02
CSDE1-204ENST00000369530 TCIRG1Q13488 830 aa8.7□□□□□ -1.02
CSDE1-204ENST00000369530 ATF5Q9Y2D1 282 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-204ENST00000369530 NAV1Q8NEY1 1877 aa8.7□□□□□ -1.02
CSDE1-204ENST00000369530 GTF2E1P29083 439 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-204ENST00000369530 SERPINB2P05120 415 aa8.69□□□□□ -1.02
CSDE1-204ENST00000369530 LMOD3Q0VAK6 560 aa8.69□□□□□ -1.02
CSDE1-204ENST00000369530 ZBTB7CA1YPR0 619 aa8.69□□□□□ -1.02
CSDE1-204ENST00000369530 L1TD1Q5T7N2 865 aaKnown RBP8.69□□□□□ -1.02
CSDE1-204ENST00000369530 G2E3Q7L622 706 aa8.69□□□□□ -1.02
CSDE1-204ENST00000369530 CHPF2Q9P2E5 772 aa8.69□□□□□ -1.02
CSDE1-204ENST00000369530 MYH2Q9UKX2 1941 aa8.69□□□□□ -1.02
CSDE1-204ENST00000369530 CCDC146Q8IYE0 955 aa8.68□□□□□ -1.02
CSDE1-204ENST00000369530 GMLQ99445 158 aa8.68□□□□□ -1.02
CSDE1-204ENST00000369530 LCTP09848 1927 aa8.68□□□□□ -1.02
CSDE1-204ENST00000369530 KIF16BQ96L93 1317 aa8.68□□□□□ -1.02
CSDE1-204ENST00000369530 CHRM1P11229 460 aaPredicted RBP8.68□□□□□ -1.02
CSDE1-204ENST00000369530 MAP7D2Q96T17 732 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms