RNA–Protein interactions for RNA: YLR086W

SMC4, Transcript of Subunit of the condensin complex, yeast

Gene SMC4, Length 4,257 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC4	YLR086W	NPP1	P25353	742 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	PER1	P25625	357 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	MOT2	P34909	587 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	CRP1	P38845	465 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	GID8	P40208	455 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	CCT5	P40413	562 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	PUS4	P48567	403 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	DUS3	Q06053	668 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	NBA1	Q08229	501 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	ALG6	Q12001	544 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	BI4	P03879	638 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	SRM1	P21827	482 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	YCK2	P23292	546 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	AAR2	P32357	355 aa	Predicted RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	MCD4	P36051	919 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	PCM1	P38628	557 aa	Known RBP	1.81	□□□□□ -2.12
SMC4	YLR086W	ICP55	P40051	511 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	YER158C	P40095	573 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	1.81	□□□□□ -2.12	not detected
SMC4	YLR086W	TFB2	Q02939	513 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	THI21	Q08975	551 aa		1.81	□□□□□ -2.12
SMC4	YLR086W	MEF1	P25039	761 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	HOG1	P32485	435 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	MXR1	P40029	184 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	TPP1	Q03796	238 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	YDR306C	Q06640	478 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	1.8	□□□□□ -2.12	not detected
SMC4	YLR086W	NPP2	P39997	493 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	NIT3	P49954	291 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	HFM1	P51979	1187 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	EAR1	Q03212	550 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	DED1	P06634	604 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	TOM70	P07213	617 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	ABZ1	P37254	787 aa	Predicted RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	YBR071W	P38243	211 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	ECM1	P39715	212 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	GZF3	P42944	551 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	GYP8	P43570	497 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	CHA4	P43634	648 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	BNA2	P47125	453 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	UME1	Q03010	460 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	TRE1	Q08919	783 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	CDC9	P04819	755 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	CCR4	P31384	837 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	MDJ1	P35191	511 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	CTF8	P38877	133 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	CKB2	P38930	258 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	RRP8	P38961	392 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	GPP1	P41277	250 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	PAP2	P53632	584 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	RCM1	P53972	490 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	HFD1	Q04458	532 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	TDA6	Q06466	467 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	CDA1	Q06702	301 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	THI73	Q07904	523 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	GUP2	Q08929	609 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	RIB2	Q12362	591 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	LPX1	Q12405	387 aa	Known RBP	1.8	□□□□□ -2.12
SMC4	YLR086W	YBR182C-A	Q8TGU6	64 aa		1.8	□□□□□ -2.12
SMC4	YLR086W	MIH1	P23748	554 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	SFP1	P32432	683 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	STE13	P33894	931 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	DID4	P36108	232 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	MNN11	P46985	422 aa	Known RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	PBP1	P53297	722 aa	Known RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	YPL034W	Q03083	165 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	RSC3	Q06639	885 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	YTM1	Q12024	460 aa	Predicted RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	HSF1	P10961	833 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	KIN2	P13186	1147 aa	Known RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	PWP2	P25635	923 aa	Known RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	YRO2	P38079	344 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	EMP65	P40085	556 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	MET13	P53128	600 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	PEX8	P53248	589 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	HDA1	P53973	706 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	MTQ2	Q03920	221 aa	Predicted RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	YDR514C	Q04408	483 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	ADY3	Q07732	790 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	YLR122C	Q12312	125 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	SPT6	P23615	1451 aa	Known RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	YKR018C	P36114	725 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	SAH1	P39954	449 aa	Known RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	TPM2	P40414	161 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	SBE2	P42223	864 aa	Known RBP	1.79	□□□□□ -2.12
SMC4	YLR086W	NIT2	P47016	307 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	ATG33	Q06485	197 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	MET7	Q08645	548 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	HFI1	Q12060	488 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	YPR053C	Q6Q5F3	151 aa		1.79	□□□□□ -2.12
SMC4	YLR086W	TSR4	P25040	408 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	PPH3	P32345	308 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	STE14	P32584	239 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	YPT7	P32939	208 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	KTR4	P38131	464 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	RFC5	P38251	354 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	MET12	P46151	657 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	YJR039W	P47107	1121 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	YGR237C	P50089	785 aa		1.78	□□□□□ -2.12
SMC4	YLR086W	COG6	P53959	839 aa		1.78	□□□□□ -2.12

Retrieved 100 of 5,963 RNA–protein pairs in 41.5 ms