RNA–Protein interactions for RNA: YGR156W

PTI1, Transcript of Essential component of CPF (cleavage and polyadenylation factor), yeast

Gene PTI1, Length 1,278 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTI1	YGR156W	ENB1	Q08299	606 aa		5.02	□□□□□ -1.61
PTI1	YGR156W	DNA2	P38859	1522 aa		5.02	□□□□□ -1.61
PTI1	YGR156W	SPE1	P08432	466 aa		5.01	□□□□□ -1.61
PTI1	YGR156W	SRP101	P32916	621 aa		5.01	□□□□□ -1.61
PTI1	YGR156W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.01	□□□□□ -1.61	not detected
PTI1	YGR156W	MOH1	P38191	138 aa		5.01	□□□□□ -1.61
PTI1	YGR156W	SAH1	P39954	449 aa	Known RBP	5.01	□□□□□ -1.61
PTI1	YGR156W	SRT1	Q03175	343 aa		5.01	□□□□□ -1.61
PTI1	YGR156W	CDA1	Q06702	301 aa		5.01	□□□□□ -1.61
PTI1	YGR156W	KOG1	P38873	1557 aa		5	□□□□□ -1.61
PTI1	YGR156W	FUN30	P31380	1131 aa		5	□□□□□ -1.61
PTI1	YGR156W	DUT1	P33317	147 aa		5	□□□□□ -1.61
PTI1	YGR156W	KRI1	P42846	591 aa	Known RBP	5	□□□□□ -1.61
PTI1	YGR156W	EEB1	Q02891	456 aa		5	□□□□□ -1.61
PTI1	YGR156W	YPL066W	Q12194	479 aa		5	□□□□□ -1.61
PTI1	YGR156W	NPC2	Q12408	173 aa		5	□□□□□ -1.61
PTI1	YGR156W	MNR2	P35724	969 aa		4.99	□□□□□ -1.61
PTI1	YGR156W	NNF1	P47149	201 aa		4.99	□□□□□ -1.61
PTI1	YGR156W	SRP1	Q02821	542 aa	Known RBP	4.99	□□□□□ -1.61
PTI1	YGR156W	HRQ1	Q05549	1077 aa		4.99	□□□□□ -1.61
PTI1	YGR156W	YLR225C	Q05948	407 aa	Known RBP	4.99	□□□□□ -1.61
PTI1	YGR156W	GUP2	Q08929	609 aa		4.99	□□□□□ -1.61
PTI1	YGR156W	CAD1	P24813	409 aa	Known RBP	4.98	□□□□□ -1.61
PTI1	YGR156W	NAP1	P25293	417 aa	Known RBP	4.98	□□□□□ -1.61
PTI1	YGR156W	EFT1	P32324	842 aa	Known RBP	4.98	□□□□□ -1.61
PTI1	YGR156W	YKL151C	P36059	337 aa		4.98	□□□□□ -1.61
PTI1	YGR156W	URM1	P40554	99 aa	Predicted RBP	4.98	□□□□□ -1.61
PTI1	YGR156W	SUL1	P38359	859 aa		4.97	□□□□□ -1.61
PTI1	YGR156W	NCS6	P53088	359 aa		4.97	□□□□□ -1.61
PTI1	YGR156W	TCB3	Q03640	1545 aa	Known RBP	4.97	□□□□□ -1.61
PTI1	YGR156W	RPC82	P32349	654 aa		4.96	□□□□□ -1.62
PTI1	YGR156W	KTR4	P38131	464 aa		4.96	□□□□□ -1.62
PTI1	YGR156W	GIC1	P38785	314 aa		4.96	□□□□□ -1.62
PTI1	YGR156W	YOL073C	Q08232	322 aa		4.96	□□□□□ -1.62
PTI1	YGR156W	SWR1	Q05471	1514 aa		4.96	□□□□□ -1.62
PTI1	YGR156W	KAR4	P25583	335 aa		4.95	□□□□□ -1.62
PTI1	YGR156W	VPS16	Q03308	798 aa		4.95	□□□□□ -1.62
PTI1	YGR156W	FPR4	Q06205	392 aa	Predicted RBP	4.95	□□□□□ -1.62
PTI1	YGR156W	JIP5	Q06214	492 aa	Predicted RBP	4.95	□□□□□ -1.62
PTI1	YGR156W	PIN2	Q12057	282 aa		4.95	□□□□□ -1.62
PTI1	YGR156W	STU2	P46675	888 aa		4.94	□□□□□ -1.62
PTI1	YGR156W	DOS2	P54858	310 aa		4.94	□□□□□ -1.62
PTI1	YGR156W	YPR196W	Q06595	470 aa		4.94	□□□□□ -1.62
PTI1	YGR156W	TIM44	Q01852	431 aa		4.93	□□□□□ -1.62
PTI1	YGR156W	WHI4	Q07655	649 aa	Known RBP	4.93	□□□□□ -1.62
PTI1	YGR156W	YLR040C	Q07988	224 aa		4.93	□□□□□ -1.62
PTI1	YGR156W	ERG4	P25340	473 aa		4.92	□□□□□ -1.62
PTI1	YGR156W	SED4	P25365	1065 aa		4.92	□□□□□ -1.62
PTI1	YGR156W	YGR053C	P53234	283 aa		4.92	□□□□□ -1.62
PTI1	YGR156W	LAS17	Q12446	633 aa		4.92	□□□□□ -1.62
PTI1	YGR156W	SFB2	P53953	876 aa		4.91	□□□□□ -1.62
PTI1	YGR156W	MCH5	Q08777	521 aa		4.91	□□□□□ -1.62
PTI1	YGR156W	ACF2	Q12168	779 aa		4.91	□□□□□ -1.62
PTI1	YGR156W	TRP4	P07285	380 aa	Predicted RBP	4.9	□□□□□ -1.63
PTI1	YGR156W	GYP7	P48365	746 aa		4.9	□□□□□ -1.63
PTI1	YGR156W	ALD6	P54115	500 aa	Known RBP	4.9	□□□□□ -1.63
PTI1	YGR156W	DUS3	Q06053	668 aa	Known RBP	4.9	□□□□□ -1.63
PTI1	YGR156W	UPC2	Q12151	913 aa		4.9	□□□□□ -1.63
PTI1	YGR156W	YOL098C	Q12496	1037 aa		4.9	□□□□□ -1.63
PTI1	YGR156W	CLN2	P20438	545 aa		4.89	□□□□□ -1.63
PTI1	YGR156W	CDC12	P32468	407 aa	Known RBP	4.89	□□□□□ -1.63
PTI1	YGR156W	ABD1	P32783	436 aa	Predicted RBP	4.89	□□□□□ -1.63
PTI1	YGR156W	VAC8	P39968	578 aa		4.89	□□□□□ -1.63
PTI1	YGR156W	STB4	P50104	949 aa		4.89	□□□□□ -1.63
PTI1	YGR156W	RAI1	P53063	387 aa	Known RBP	4.89	□□□□□ -1.63
PTI1	YGR156W	RNT1	Q02555	471 aa		4.89	□□□□□ -1.63
PTI1	YGR156W	GDE1	Q02979	1223 aa		4.89	□□□□□ -1.63
PTI1	YGR156W	IOC4	Q04213	475 aa		4.89	□□□□□ -1.63
PTI1	YGR156W	OMS1	Q06668	471 aa		4.89	□□□□□ -1.63
PTI1	YGR156W	YKR078W	P36158	585 aa	Known RBP	4.88	□□□□□ -1.63
PTI1	YGR156W	NMD2	P38798	1089 aa	Known RBP	4.88	□□□□□ -1.63
PTI1	YGR156W	MBP1	P39678	833 aa		4.88	□□□□□ -1.63
PTI1	YGR156W	YER158C	P40095	573 aa		4.88	□□□□□ -1.63
PTI1	YGR156W	VPS30	Q02948	557 aa		4.88	□□□□□ -1.63
PTI1	YGR156W	YMR206W	Q03695	313 aa		4.88	□□□□□ -1.63
PTI1	YGR156W	TMN2	Q04562	672 aa		4.88	□□□□□ -1.63
PTI1	YGR156W	ESC2	Q06340	456 aa		4.88	□□□□□ -1.63
PTI1	YGR156W	SSF2	Q12153	453 aa	Predicted RBP	4.88	□□□□□ -1.63
PTI1	YGR156W	AGP1	P25376	633 aa		4.87	□□□□□ -1.63
PTI1	YGR156W	SBA1	P28707	216 aa	Known RBP	4.87	□□□□□ -1.63
PTI1	YGR156W	MAD1	P40957	749 aa		4.87	□□□□□ -1.63
PTI1	YGR156W	YJL049W	P47048	450 aa		4.87	□□□□□ -1.63
PTI1	YGR156W	FAA4	P47912	694 aa	Known RBP	4.87	□□□□□ -1.63
PTI1	YGR156W	BUL1	P48524	976 aa		4.87	□□□□□ -1.63
PTI1	YGR156W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	RIP-Chip
PTI1	YGR156W	FAL1	Q12099	399 aa	Known RBP	4.87	□□□□□ -1.63
PTI1	YGR156W	NPP2	P39997	493 aa		4.86	□□□□□ -1.63
PTI1	YGR156W	CWC24	P53769	259 aa		4.86	□□□□□ -1.63
PTI1	YGR156W	TY1B-DR4	Q07793	1604 aa		4.86	□□□□□ -1.63
PTI1	YGR156W	ADE8	P04161	214 aa		4.85	□□□□□ -1.63
PTI1	YGR156W	ALG7	P07286	448 aa		4.85	□□□□□ -1.63
PTI1	YGR156W	CDC48	P25694	835 aa	Known RBP	4.85	□□□□□ -1.63
PTI1	YGR156W	PPH3	P32345	308 aa		4.85	□□□□□ -1.63
PTI1	YGR156W	SPC42	P36094	363 aa		4.85	□□□□□ -1.63
PTI1	YGR156W	QRI1	P43123	477 aa	Known RBP	4.85	□□□□□ -1.63
PTI1	YGR156W	LGE1	Q02796	332 aa	Known RBP	4.85	□□□□□ -1.63
PTI1	YGR156W	NOT3	P06102	836 aa	Known RBP	4.84	□□□□□ -1.63
PTI1	YGR156W	BRN1	P38170	754 aa		4.84	□□□□□ -1.63
PTI1	YGR156W	NSE3	Q05541	303 aa		4.84	□□□□□ -1.63
PTI1	YGR156W	YDR306C	Q06640	478 aa		4.84	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 63.4 ms