RNA–Protein interactions for RNA: ENST00000617246.4

LPP-220, Transcript of LIM domain containing preferred translocation partner in lipoma, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPP, Length 18,220 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPP-220ENST00000617246 PIK3R4Q99570 1358 aa4□□□□□ -1.77
LPP-220ENST00000617246 MYH2Q9UKX2 1941 aa4□□□□□ -1.77
LPP-220ENST00000617246 CHMP4BP1P59074 171 aa4□□□□□ -1.77
LPP-220ENST00000617246 PDE4AP27815 886 aa4□□□□□ -1.77
LPP-220ENST00000617246 TRAPPC3LQ5T215 181 aa4□□□□□ -1.77
LPP-220ENST00000617246 MYBBP1AQ9BQG0 1328 aaKnown RBP4□□□□□ -1.77
LPP-220ENST00000617246 CNKSR1Q969H4 720 aa4□□□□□ -1.77
LPP-220ENST00000617246 SAFBQ15424 915 aaKnown RBP eCLIP3.99□□□□□ -1.77
LPP-220ENST00000617246 FAM9BQ8IZU0 186 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 AMOTL2Q9Y2J4 779 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 PLA2R1Q13018 1463 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 MRS2Q9HD23 443 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 SEC63Q9UGP8 760 aaKnown RBP3.99□□□□□ -1.77
LPP-220ENST00000617246 TSPYL4Q9UJ04 414 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 ANKARQ7Z5J8 1434 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 ERC2O15083 957 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 POTEJP0CG39 1038 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 ST20-MTHFSA0A0A6YYL1 179 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 MTHFSP49914 203 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 BTG4Q9NY30 223 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 LMO7Q8WWI1 1683 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 KIF7Q2M1P5 1343 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 SLC4A10Q6U841 1118 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 MPRIPQ6WCQ1 1025 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 COA7Q96BR5 231 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 NLRP3Q96P20 1036 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 NSD2O96028 1365 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 GAS2L1Q99501 681 aaPredicted RBP3.99□□□□□ -1.77
LPP-220ENST00000617246 DEPDC5O75140 1603 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 PTGDRQ13258 359 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 KCNJ6P48051 423 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 COL17A1Q9UMD9 1497 aaPredicted RBP3.99□□□□□ -1.77
LPP-220ENST00000617246 AKAP4Q5JQC9 854 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 RNF20Q5VTR2 975 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 SERTAD1Q9UHV2 236 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 AKAP2Q9Y2D5 859 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 G3BP1Q13283 466 aaKnown RBP eCLIP3.99□□□□□ -1.77
LPP-220ENST00000617246 UBE2Q2Q8WVN8 375 aa3.99□□□□□ -1.77
LPP-220ENST00000617246 LARGE2Q8N3Y3 721 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 PLIN1O60240 522 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 EIF2S2P20042 333 aaKnown RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 GNAI1P63096 354 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 FERMT1Q9BQL6 677 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 RGPD4Q7Z3J3 1758 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 KRT18P05783 430 aaKnown RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 ZNF76P36508 570 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 MAP3K11Q16584 847 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 ZNF530Q6P9A1 599 aaPredicted RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 AFAP1Q8N556 730 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 ARHGEF10LQ9HCE6 1279 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 TPTE2Q6XPS3 522 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 ANKRD18AQ8IVF6 992 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 NBPF26B4DH59 902 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 IFIT1P09914 478 aaKnown RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 ACTN1P12814 892 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 LMTK2Q8IWU2 1503 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 HIP1O00291 1037 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 IFIT2P09913 472 aaKnown RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 PTMSP20962 102 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 NAA30Q147X3 362 aaPredicted RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 DNAJC5BQ9UF47 199 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 MED1Q15648 1581 aaPredicted RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 TNS4Q8IZW8 715 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 SMC1BQ8NDV3 1235 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 SLKQ9H2G2 1235 aaPredicted RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 NUTM2GQ5VZR2 741 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 ERICH6BQ5W0A0 696 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 TULP4Q9NRJ4 1543 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 ARID5AQ03989 594 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 GCNAQ96QF7 691 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 REM2Q8IYK8 340 aaPredicted RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 FRAT1Q92837 279 aaPredicted RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 ZNHIT6Q9NWK9 470 aaKnown RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 ERVK-7P63135 1459 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 PTCD1O75127 700 aaKnown RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 TPM3P06753 285 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 SMC1AQ14683 1233 aaKnown RBP3.98□□□□□ -1.77
LPP-220ENST00000617246 ELMOD1Q8N336 334 aa3.98□□□□□ -1.77
LPP-220ENST00000617246 VAMP4O75379 141 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 SLC5A1P13866 664 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 ZFYVE9O95405 1425 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 E2F5Q15329 346 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 TSR1Q2NL82 804 aaKnown RBP3.97□□□□□ -1.77
LPP-220ENST00000617246 CCDC178Q5BJE1 867 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 FAM184AQ8NB25 1140 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 CDK19Q9BWU1 502 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 CCDC93Q567U6 631 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 CC2D1BQ5T0F9 858 aaKnown RBP3.97□□□□□ -1.77
LPP-220ENST00000617246 FMNL2Q96PY5 1086 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 ZBED2Q9BTP6 218 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 USP48Q86UV5 1035 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 MYO3BQ8WXR4 1341 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 IRX3P78415 501 aaPredicted RBP3.97□□□□□ -1.77
LPP-220ENST00000617246 FKBP5Q13451 457 aaPredicted RBP3.97□□□□□ -1.77
LPP-220ENST00000617246 FAM98CQ17RN3 349 aaKnown RBP3.97□□□□□ -1.77
LPP-220ENST00000617246 DALRD3Q5D0E6 543 aaKnown RBP3.97□□□□□ -1.77
LPP-220ENST00000617246 CHMP5Q9NZZ3 219 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 MYH3P11055 1940 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 CCDC173Q0VFZ6 552 aa3.97□□□□□ -1.77
LPP-220ENST00000617246 CNBD1Q8NA66 436 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms