RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 PTPN23Q9H3S7 1636 aa11.17□□□□□ -0.62
NEDD8-203ENST00000524927 AATKQ6ZMQ8 1374 aa11.16□□□□□ -0.62
NEDD8-203ENST00000524927 NPHP3Q7Z494 1330 aa11.16□□□□□ -0.62
NEDD8-203ENST00000524927 MTMR2Q13614 643 aa11.16□□□□□ -0.62
NEDD8-203ENST00000524927 FAM196AQ6ZSG2 479 aa11.16□□□□□ -0.62
NEDD8-203ENST00000524927 ARID3AQ99856 593 aa11.16□□□□□ -0.62
NEDD8-203ENST00000524927 EEA1Q15075 1411 aa11.16□□□□□ -0.62
NEDD8-203ENST00000524927 XRN1Q8IZH2 1706 aaKnown RBP11.15□□□□□ -0.62
NEDD8-203ENST00000524927 NWD2Q9ULI1 1742 aa11.15□□□□□ -0.62
NEDD8-203ENST00000524927 C6orf229H3BNL8 230 aa11.15□□□□□ -0.62
NEDD8-203ENST00000524927 GPR162Q16538 588 aa11.15□□□□□ -0.62
NEDD8-203ENST00000524927 Q3C1V9 767 aa11.15□□□□□ -0.62
NEDD8-203ENST00000524927 HOMEZQ8IX15 550 aa11.15□□□□□ -0.62
NEDD8-203ENST00000524927 TSC1Q92574 1164 aa11.15□□□□□ -0.62
NEDD8-203ENST00000524927 ARHGEF5Q12774 1597 aa11.15□□□□□ -0.62
NEDD8-203ENST00000524927 CASZ1Q86V15 1759 aa11.14□□□□□ -0.63
NEDD8-203ENST00000524927 CCDC24Q8N4L8 307 aa11.14□□□□□ -0.63
NEDD8-203ENST00000524927 PRM3Q9NNZ6 103 aa11.14□□□□□ -0.63
NEDD8-203ENST00000524927 COG6Q9Y2V7 657 aa11.14□□□□□ -0.63
NEDD8-203ENST00000524927 MAP3K5Q99683 1374 aa11.14□□□□□ -0.63
NEDD8-203ENST00000524927 USP32Q8NFA0 1604 aa11.13□□□□□ -0.63
NEDD8-203ENST00000524927 ADGRL2O95490 1459 aa11.13□□□□□ -0.63
NEDD8-203ENST00000524927 PXDNQ92626 1479 aa11.13□□□□□ -0.63
NEDD8-203ENST00000524927 RC3H1Q5TC82 1133 aaKnown RBP11.13□□□□□ -0.63
NEDD8-203ENST00000524927 MTMR14Q8NCE2 650 aa11.13□□□□□ -0.63
NEDD8-203ENST00000524927 NEXMIFQ5QGS0 1516 aa11.13□□□□□ -0.63
NEDD8-203ENST00000524927 USP17L8P0C7I0 530 aa11.12□□□□□ -0.63
NEDD8-203ENST00000524927 PTCRAQ6ISU1 281 aaPredicted RBP11.12□□□□□ -0.63
NEDD8-203ENST00000524927 WWC3Q9ULE0 1092 aa11.12□□□□□ -0.63
NEDD8-203ENST00000524927 NALCNQ8IZF0 1738 aa11.12□□□□□ -0.63
NEDD8-203ENST00000524927 ATP10DQ9P241 1426 aa11.11□□□□□ -0.63
NEDD8-203ENST00000524927 LMTK2Q8IWU2 1503 aa11.11□□□□□ -0.63
NEDD8-203ENST00000524927 ZBTB7AO95365 584 aa11.11□□□□□ -0.63
NEDD8-203ENST00000524927 JMYQ8N9B5 988 aa11.11□□□□□ -0.63
NEDD8-203ENST00000524927 HELBQ8NG08 1087 aaPredicted RBP11.11□□□□□ -0.63
NEDD8-203ENST00000524927 C1orf115Q9H7X2 142 aa11.11□□□□□ -0.63
NEDD8-203ENST00000524927 PLCH1Q4KWH8 1693 aa11.11□□□□□ -0.63
NEDD8-203ENST00000524927 GDPD2Q9HCC8 539 aa11.1□□□□□ -0.63
NEDD8-203ENST00000524927 KANK1Q14678 1352 aa11.1□□□□□ -0.63
NEDD8-203ENST00000524927 ABCC5O15440 1437 aa11.09□□□□□ -0.63
NEDD8-203ENST00000524927 DUOX2Q9NRD8 1548 aa11.09□□□□□ -0.63
NEDD8-203ENST00000524927 WIPF1O43516 503 aa11.09□□□□□ -0.63
NEDD8-203ENST00000524927 CTDSPL2Q05D32 466 aa11.09□□□□□ -0.63
NEDD8-203ENST00000524927 WWC1Q8IX03 1113 aa11.09□□□□□ -0.63
NEDD8-203ENST00000524927 TRIM47Q96LD4 638 aa11.09□□□□□ -0.63
NEDD8-203ENST00000524927 STK17AQ9UEE5 414 aa11.09□□□□□ -0.63
NEDD8-203ENST00000524927 CROCC2H7BZ55 1655 aa11.08□□□□□ -0.64
NEDD8-203ENST00000524927 LRPPRCP42704 1394 aaKnown RBP11.08□□□□□ -0.64
NEDD8-203ENST00000524927 THSD7AQ9UPZ6 1657 aa11.08□□□□□ -0.64
NEDD8-203ENST00000524927 MYO5BQ9ULV0 1848 aa11.07□□□□□ -0.64
NEDD8-203ENST00000524927 CFAP99D6REC4 459 aa11.07□□□□□ -0.64
NEDD8-203ENST00000524927 TERTO14746 1132 aaKnown RBP11.07□□□□□ -0.64
NEDD8-203ENST00000524927 ABL2P42684 1182 aa11.07□□□□□ -0.64
NEDD8-203ENST00000524927 ZNF330Q9Y3S2 320 aaPredicted RBP11.07□□□□□ -0.64
NEDD8-203ENST00000524927 SIAH2O43255 324 aa11.06□□□□□ -0.64
NEDD8-203ENST00000524927 PDGFDQ9GZP0 370 aaPredicted RBP11.06□□□□□ -0.64
NEDD8-203ENST00000524927 GOLGB1Q14789 3259 aaKnown RBP11.06□□□□□ -0.64
NEDD8-203ENST00000524927 SPATA31A3Q5VYP0 1347 aa11.06□□□□□ -0.64
NEDD8-203ENST00000524927 GCC2Q8IWJ2 1684 aa11.05□□□□□ -0.64
NEDD8-203ENST00000524927 PRR7Q8TB68 274 aa11.05□□□□□ -0.64
NEDD8-203ENST00000524927 KLRG1Q96E93 195 aa11.05□□□□□ -0.64
NEDD8-203ENST00000524927 ERBINQ96RT1 1412 aa11.05□□□□□ -0.64
NEDD8-203ENST00000524927 MTFR1LQ9H019 292 aa11.05□□□□□ -0.64
NEDD8-203ENST00000524927 TBC1D2BQ9UPU7 963 aa11.05□□□□□ -0.64
NEDD8-203ENST00000524927 CEP162Q5TB80 1403 aa11.04□□□□□ -0.64
NEDD8-203ENST00000524927 FOXO3O43524 673 aa11.04□□□□□ -0.64
NEDD8-203ENST00000524927 JUNDP17535 347 aa11.04□□□□□ -0.64
NEDD8-203ENST00000524927 XPCQ01831 940 aaPredicted RBP11.04□□□□□ -0.64
NEDD8-203ENST00000524927 SPATA31A5Q5VU36 1347 aa11.04□□□□□ -0.64
NEDD8-203ENST00000524927 SPATA31A7Q8IWB4 1347 aa11.04□□□□□ -0.64
NEDD8-203ENST00000524927 GRIN3BO60391 1043 aa11.03□□□□□ -0.64
NEDD8-203ENST00000524927 ALDH1A1P00352 501 aa11.03□□□□□ -0.64
NEDD8-203ENST00000524927 WNT7BP56706 349 aa11.03□□□□□ -0.64
NEDD8-203ENST00000524927 INSM1Q01101 510 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-203ENST00000524927 ESCO1Q5FWF5 840 aa11.03□□□□□ -0.64
NEDD8-203ENST00000524927 RETREG3Q86VR2 466 aa11.03□□□□□ -0.64
NEDD8-203ENST00000524927 LRRN4Q8WUT4 740 aa11.03□□□□□ -0.64
NEDD8-203ENST00000524927 NDUFB9Q9Y6M9 179 aa11.03□□□□□ -0.64
NEDD8-203ENST00000524927 NRAPQ86VF7 1730 aa11.02□□□□□ -0.65
NEDD8-203ENST00000524927 TRIM46Q7Z4K8 759 aa11.01□□□□□ -0.65
NEDD8-203ENST00000524927 CCDC82Q8N4S0 544 aa11.01□□□□□ -0.65
NEDD8-203ENST00000524927 HMX1Q9NP08 348 aaPredicted RBP11.01□□□□□ -0.65
NEDD8-203ENST00000524927 METP08581 1390 aa11.01□□□□□ -0.65
NEDD8-203ENST00000524927 TNS2Q63HR2 1409 aa11.01□□□□□ -0.65
NEDD8-203ENST00000524927 BMP1P13497 986 aa11□□□□□ -0.65
NEDD8-203ENST00000524927 SENP2Q9HC62 589 aa11□□□□□ -0.65
NEDD8-203ENST00000524927 ADCY9O60503 1353 aa11□□□□□ -0.65
NEDD8-203ENST00000524927 RGPD3A6NKT7 1758 aaPredicted RBP11□□□□□ -0.65
NEDD8-203ENST00000524927 RGPD4Q7Z3J3 1758 aa11□□□□□ -0.65
NEDD8-203ENST00000524927 PCNTO95613 3336 aa10.99□□□□□ -0.65
NEDD8-203ENST00000524927 NRXN3Q9Y4C0 1643 aa10.99□□□□□ -0.65
NEDD8-203ENST00000524927 NUDT12Q9BQG2 462 aa10.99□□□□□ -0.65
NEDD8-203ENST00000524927 BTG4Q9NY30 223 aa10.99□□□□□ -0.65
NEDD8-203ENST00000524927 PLSCR1O15162 318 aa10.98□□□□□ -0.65
NEDD8-203ENST00000524927 SH3BP2P78314 561 aa10.98□□□□□ -0.65
NEDD8-203ENST00000524927 CCDC97Q96F63 343 aaPredicted RBP10.98□□□□□ -0.65
NEDD8-203ENST00000524927 RRBP1Q9P2E9 1410 aaKnown RBP10.98□□□□□ -0.65
NEDD8-203ENST00000524927 TRIM34Q9BYJ4 488 aa10.97□□□□□ -0.65
NEDD8-203ENST00000524927 KIF15Q9NS87 1388 aa10.97□□□□□ -0.65
NEDD8-203ENST00000524927 CCDC144AA2RUR9 1427 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms