RNA–Protein interactions for RNA: ENST00000430771.2

CHD4-202, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 527 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-202ENST00000430771 USP42Q9H9J4 1324 aaKnown RBP14.03□□□□□ -0.16
CHD4-202ENST00000430771 NUP98P52948 1817 aa14.03□□□□□ -0.16
CHD4-202ENST00000430771 IPO8O15397 1037 aaKnown RBP14.02□□□□□ -0.17
CHD4-202ENST00000430771 ZPR1O75312 459 aa14.02□□□□□ -0.17
CHD4-202ENST00000430771 ARXQ96QS3 562 aa14.02□□□□□ -0.17
CHD4-202ENST00000430771 NARFQ9UHQ1 456 aa14.02□□□□□ -0.17
CHD4-202ENST00000430771 AFDNP55196 1824 aaKnown RBP14.01□□□□□ -0.17
CHD4-202ENST00000430771 COL24A1Q17RW2 1714 aa14.01□□□□□ -0.17
CHD4-202ENST00000430771 ERVV-1B6SEH8 477 aa14.01□□□□□ -0.17
CHD4-202ENST00000430771 BCAR3O75815 825 aa14.01□□□□□ -0.17
CHD4-202ENST00000430771 HSP90AB3PQ58FF7 597 aa14.01□□□□□ -0.17
CHD4-202ENST00000430771 TTLL7Q6ZT98 887 aa14.01□□□□□ -0.17
CHD4-202ENST00000430771 AMIGO3Q86WK7 504 aa14.01□□□□□ -0.17
CHD4-202ENST00000430771 PLBD2Q8NHP8 589 aa14.01□□□□□ -0.17
CHD4-202ENST00000430771 ARHGEF1Q92888 912 aaKnown RBP14.01□□□□□ -0.17
CHD4-202ENST00000430771 API5Q9BZZ5 524 aaKnown RBP14.01□□□□□ -0.17
CHD4-202ENST00000430771 ATP10DQ9P241 1426 aa14□□□□□ -0.17
CHD4-202ENST00000430771 ADCY9O60503 1353 aa14□□□□□ -0.17
CHD4-202ENST00000430771 MSH5O43196 834 aa14□□□□□ -0.17
CHD4-202ENST00000430771 CAMTA2O94983 1202 aa14□□□□□ -0.17
CHD4-202ENST00000430771 ZKSCAN2Q63HK3 967 aa14□□□□□ -0.17
CHD4-202ENST00000430771 ANKRD13DQ6ZTN6 518 aa14□□□□□ -0.17
CHD4-202ENST00000430771 G2E3Q7L622 706 aa14□□□□□ -0.17
CHD4-202ENST00000430771 RIC3Q7Z5B4 369 aa14□□□□□ -0.17
CHD4-202ENST00000430771 ARHGAP45Q92619 1136 aa14□□□□□ -0.17
CHD4-202ENST00000430771 FRAT1Q92837 279 aaPredicted RBP14□□□□□ -0.17
CHD4-202ENST00000430771 ZBTB3Q9H5J0 574 aa14□□□□□ -0.17
CHD4-202ENST00000430771 TBC1D2BQ9UPU7 963 aa14□□□□□ -0.17
CHD4-202ENST00000430771 KSR2Q6VAB6 950 aa13.99□□□□□ -0.17
CHD4-202ENST00000430771 COL23A1Q86Y22 540 aaPredicted RBP13.99□□□□□ -0.17
CHD4-202ENST00000430771 NOB1Q9ULX3 412 aaKnown RBP13.99□□□□□ -0.17
CHD4-202ENST00000430771 MS4A1P11836 297 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 NEXNQ0ZGT2 675 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 R3HDM1Q15032 1099 aaKnown RBP13.98□□□□□ -0.17
CHD4-202ENST00000430771 USPL1Q5W0Q7 1092 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 CLEC4GQ6UXB4 293 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 ATF7IPQ6VMQ6 1270 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 GIGYF2Q6Y7W6 1299 aaKnown RBP13.98□□□□□ -0.17
CHD4-202ENST00000430771 SLC16A10Q8TF71 515 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 DNAAF4Q8WXU2 420 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 SRP68Q9UHB9 627 aaKnown RBP13.98□□□□□ -0.17
CHD4-202ENST00000430771 MAP3K2Q9Y2U5 619 aa13.98□□□□□ -0.17
CHD4-202ENST00000430771 PI4KAP2A4QPH2 592 aa13.97□□□□□ -0.17
CHD4-202ENST00000430771 RRP1P56182 461 aaKnown RBP13.97□□□□□ -0.17
CHD4-202ENST00000430771 SMIM5Q71RC9 77 aa13.97□□□□□ -0.17
CHD4-202ENST00000430771 FTSJ3Q8IY81 847 aaKnown RBP13.97□□□□□ -0.17
CHD4-202ENST00000430771 PI4KAP1Q8N8J0 262 aa13.97□□□□□ -0.17
CHD4-202ENST00000430771 ABCC4O15439 1325 aa13.96□□□□□ -0.17
CHD4-202ENST00000430771 GYS1P13807 737 aa13.96□□□□□ -0.17
CHD4-202ENST00000430771 TRIM27P14373 513 aa13.96□□□□□ -0.17
CHD4-202ENST00000430771 METTL22Q9BUU2 404 aaPredicted RBP13.96□□□□□ -0.17
CHD4-202ENST00000430771 CARMIL3Q8ND23 1372 aa13.96□□□□□ -0.18
CHD4-202ENST00000430771 IBTKQ9P2D0 1353 aaPredicted RBP13.96□□□□□ -0.18
CHD4-202ENST00000430771 F6X3S4 739 aa13.95□□□□□ -0.18
CHD4-202ENST00000430771 NLGN1Q8N2Q7 840 aa13.95□□□□□ -0.18
CHD4-202ENST00000430771 MYD88Q99836 296 aa13.95□□□□□ -0.18
CHD4-202ENST00000430771 LAMB2P55268 1798 aa13.95□□□□□ -0.18
CHD4-202ENST00000430771 PSDA5PKW4 1024 aaPredicted RBP13.94□□□□□ -0.18
CHD4-202ENST00000430771 CCT4P50991 539 aaKnown RBP13.94□□□□□ -0.18
CHD4-202ENST00000430771 TCIRG1Q13488 830 aa13.94□□□□□ -0.18
CHD4-202ENST00000430771 HLFQ16534 295 aa13.94□□□□□ -0.18
CHD4-202ENST00000430771 PARP10Q53GL7 1025 aa13.94□□□□□ -0.18
CHD4-202ENST00000430771 SLC4A10Q6U841 1118 aa13.94□□□□□ -0.18
CHD4-202ENST00000430771 DZIP1LQ8IYY4 767 aaKnown RBP13.94□□□□□ -0.18
CHD4-202ENST00000430771 BCL2L12Q9HB09 334 aa13.94□□□□□ -0.18
CHD4-202ENST00000430771 NRXN2Q9P2S2 1712 aa13.93□□□□□ -0.18
CHD4-202ENST00000430771 FKBP8Q14318 412 aa13.93□□□□□ -0.18
CHD4-202ENST00000430771 LINS1Q8NG48 757 aa13.93□□□□□ -0.18
CHD4-202ENST00000430771 SRCIN1Q9C0H9 1055 aa13.93□□□□□ -0.18
CHD4-202ENST00000430771 MTFR1LQ9H019 292 aa13.93□□□□□ -0.18
CHD4-202ENST00000430771 NIP7Q9Y221 180 aaKnown RBP eCLIP13.93□□□□□ -0.18
CHD4-202ENST00000430771 RNF123Q5XPI4 1314 aa13.92□□□□□ -0.18
CHD4-202ENST00000430771 ALDH1L1O75891 902 aa13.92□□□□□ -0.18
CHD4-202ENST00000430771 TBC1D9BQ66K14 1250 aa13.92□□□□□ -0.18
CHD4-202ENST00000430771 MSL1Q68DK7 614 aa13.92□□□□□ -0.18
CHD4-202ENST00000430771 ZNF34Q8IZ26 560 aa13.92□□□□□ -0.18
CHD4-202ENST00000430771 SETDB2Q96T68 719 aa13.92□□□□□ -0.18
CHD4-202ENST00000430771 ISCA1Q9BUE6 129 aa13.92□□□□□ -0.18
CHD4-202ENST00000430771 UBN2Q6ZU65 1347 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 NEURL1BA8MQ27 555 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 GPTP24298 496 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 PDE3AQ14432 1141 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 NFIXQ14938 502 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 BEND3Q5T5X7 828 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 BICDL1Q6ZP65 573 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 PPP1R42Q7Z4L9 355 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 CCDC191Q8NCU4 936 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 CLUAP1Q96AJ1 413 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 NYXQ9GZU5 481 aa13.91□□□□□ -0.18
CHD4-202ENST00000430771 CWC25Q9NXE8 425 aaPredicted RBP13.91□□□□□ -0.18
CHD4-202ENST00000430771 ATP5J2-PTCD1G3V325 749 aa13.9□□□□□ -0.18
CHD4-202ENST00000430771 NPHP1O15259 732 aa13.9□□□□□ -0.18
CHD4-202ENST00000430771 PLIN1O60240 522 aa13.9□□□□□ -0.18
CHD4-202ENST00000430771 POLD1P28340 1107 aa13.9□□□□□ -0.18
CHD4-202ENST00000430771 TRIM28Q13263 835 aaKnown RBP13.9□□□□□ -0.18
CHD4-202ENST00000430771 NLRP10Q86W26 655 aa13.9□□□□□ -0.18
CHD4-202ENST00000430771 PDGFDQ9GZP0 370 aaPredicted RBP13.9□□□□□ -0.18
CHD4-202ENST00000430771 SUPT16HQ9Y5B9 1047 aaKnown RBP13.9□□□□□ -0.18
CHD4-202ENST00000430771 PARP3Q9Y6F1 533 aa13.9□□□□□ -0.18
CHD4-202ENST00000430771 ZBTB7AO95365 584 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms