RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 STMN4Q9H169 189 aaPredicted RBP11.04□□□□□ -0.64
SNX1-202ENST00000380285 CCDC61Q9Y6R9 512 aa11.04□□□□□ -0.64
SNX1-202ENST00000380285 OPA1O60313 960 aa11.04□□□□□ -0.64
SNX1-202ENST00000380285 KDM4AO75164 1064 aa11.04□□□□□ -0.64
SNX1-202ENST00000380285 IGHMBP2P38935 993 aaKnown RBP11.04□□□□□ -0.64
SNX1-202ENST00000380285 TERF1P54274 439 aa11.04□□□□□ -0.64
SNX1-202ENST00000380285 CCDC102BQ68D86 513 aa11.04□□□□□ -0.64
SNX1-202ENST00000380285 IQCA1Q86XH1 822 aa11.04□□□□□ -0.64
SNX1-202ENST00000380285 MTMR7Q9Y216 660 aa11.04□□□□□ -0.64
SNX1-202ENST00000380285 TTF1Q15361 905 aaPredicted RBP11.03□□□□□ -0.64
SNX1-202ENST00000380285 RNF187Q5TA31 235 aaPredicted RBP11.03□□□□□ -0.64
SNX1-202ENST00000380285 FERMT3Q86UX7 667 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 SLC12A7Q9Y666 1083 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 THEMISQ8N1K5 641 aaPredicted RBP11.03□□□□□ -0.64
SNX1-202ENST00000380285 PLVAPQ9BX97 442 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 LRP2BPQ9P2M1 347 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 HSPA4P34932 840 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 LMAN1P49257 510 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 CCDC178Q5BJE1 867 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 HOOK3Q86VS8 718 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 PRDM10Q9NQV6 1147 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 NUP160Q12769 1436 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 NAPBQ9H115 298 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 A6NNZ2 444 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 TUBB8Q3ZCM7 444 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 NUTM1Q86Y26 1132 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 ZNF213O14771 459 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 ECHDC1Q9NTX5 307 aa11.03□□□□□ -0.64
SNX1-202ENST00000380285 KIAA0586Q9BVV6 1533 aa11.02□□□□□ -0.64
SNX1-202ENST00000380285 ANKRD18BA2A2Z9 1011 aa11.02□□□□□ -0.64
SNX1-202ENST00000380285 MAP3K12Q12852 859 aa11.02□□□□□ -0.64
SNX1-202ENST00000380285 SPECC1Q5M775 1068 aa11.02□□□□□ -0.64
SNX1-202ENST00000380285 ANKRD36BQ8N2N9 1353 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 SLU7O95391 586 aaKnown RBP11.02□□□□□ -0.65
SNX1-202ENST00000380285 SSBP05455 408 aaKnown RBP eCLIP11.02□□□□□ -0.65
SNX1-202ENST00000380285 AFAP1Q8N556 730 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 C20orf194Q5TEA3 1177 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 STXBP4Q6ZWJ1 553 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 CKAP2LQ8IYA6 745 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 ZMYND15Q9H091 742 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 MAGI1Q96QZ7 1491 aaPredicted RBP11.02□□□□□ -0.65
SNX1-202ENST00000380285 GSTTP1A0A1W2PQM5 241 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 CYLC1P35663 651 aaPredicted RBP11.02□□□□□ -0.65
SNX1-202ENST00000380285 ZNF76P36508 570 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 PRPHP41219 470 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 ATL3Q6DD88 541 aa11.02□□□□□ -0.65
SNX1-202ENST00000380285 XRCC6P12956 609 aaKnown RBP eCLIP11.01□□□□□ -0.65
SNX1-202ENST00000380285 ANKS4BQ8N8V4 417 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 NESP48681 1621 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 GNG11P61952 73 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 TXNDC2Q86VQ3 553 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 INTS4Q96HW7 963 aaKnown RBP11.01□□□□□ -0.65
SNX1-202ENST00000380285 TRMT1Q9NXH9 659 aaKnown RBP11.01□□□□□ -0.65
SNX1-202ENST00000380285 KIF5BP33176 963 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 SMC5Q8IY18 1101 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 STARD3NLO95772 234 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 IFIT1P09914 478 aaKnown RBP11.01□□□□□ -0.65
SNX1-202ENST00000380285 TUBB2AQ13885 445 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 KLHL10Q6JEL2 608 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 TUBB2BQ9BVA1 445 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 PIK3R4Q99570 1358 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 ABCA10Q8WWZ4 1543 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 GOLGA8BA8MQT2 603 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 MNAT1P51948 309 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 ESCO1Q5FWF5 840 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CATIPQ7Z7H3 387 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 SMAP1Q8IYB5 467 aaPredicted RBP11.01□□□□□ -0.65
SNX1-202ENST00000380285 TCP11L1Q9NUJ3 509 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CTAGE15A4D2H0 777 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CTAGE8P0CG41 777 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CTAGE6Q86UF2 777 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CTAGE4Q8IX94 777 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CCDC155Q8N6L0 562 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CALML4Q96GE6 196 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 GOLGA1Q92805 767 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 CCDC113Q9H0I3 377 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 EHMT1Q9H9B1 1298 aa11.01□□□□□ -0.65
SNX1-202ENST00000380285 MYL6BP14649 208 aa11□□□□□ -0.65
SNX1-202ENST00000380285 STK11IPQ8N1F8 1099 aa11□□□□□ -0.65
SNX1-202ENST00000380285 SNAPC4Q5SXM2 1469 aa11□□□□□ -0.65
SNX1-202ENST00000380285 HLTFQ14527 1009 aaKnown RBP eCLIP11□□□□□ -0.65
SNX1-202ENST00000380285 OGFRQ9NZT2 677 aa11□□□□□ -0.65
SNX1-202ENST00000380285 TTC21AQ8NDW8 1320 aa11□□□□□ -0.65
SNX1-202ENST00000380285 IDH1O75874 414 aaKnown RBP11□□□□□ -0.65
SNX1-202ENST00000380285 GTF2A1P52655 376 aaPredicted RBP11□□□□□ -0.65
SNX1-202ENST00000380285 RAB3GAP1Q15042 981 aa11□□□□□ -0.65
SNX1-202ENST00000380285 DBF4Q9UBU7 674 aaPredicted RBP11□□□□□ -0.65
SNX1-202ENST00000380285 FSD2A1L4K1 749 aa11□□□□□ -0.65
SNX1-202ENST00000380285 CTAGE9A4FU28 777 aa11□□□□□ -0.65
SNX1-202ENST00000380285 NUTM2GQ5VZR2 741 aa11□□□□□ -0.65
SNX1-202ENST00000380285 ZNF652Q9Y2D9 606 aa11□□□□□ -0.65
SNX1-202ENST00000380285 SKILP12757 684 aa11□□□□□ -0.65
SNX1-202ENST00000380285 MTIF2P46199 727 aaKnown RBP11□□□□□ -0.65
SNX1-202ENST00000380285 UBASH3AP57075 661 aa11□□□□□ -0.65
SNX1-202ENST00000380285 METTL24Q5JXM2 366 aa11□□□□□ -0.65
SNX1-202ENST00000380285 ANKRD24Q8TF21 1146 aa11□□□□□ -0.65
SNX1-202ENST00000380285 ABCC5O15440 1437 aa11□□□□□ -0.65
SNX1-202ENST00000380285 RBM42Q9BTD8 480 aaKnown RBP10.99□□□□□ -0.65
SNX1-202ENST00000380285 SELENOOQ9BVL4 669 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 CCDC194A0A1B0GVG4 234 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms