RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 ADCK5Q3MIX3 580 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 NPHP1O15259 732 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 SRGAP3O43295 1099 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 STK3Q13188 491 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 PPP1R42Q7Z4L9 355 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 SPTLC3Q9NUV7 552 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 ATP6V1DQ9Y5K8 247 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 LIG1P18858 919 aa9.4□□□□□ -0.91
VMA21-201ENST00000330374 CCDC61Q9Y6R9 512 aa9.4□□□□□ -0.91
VMA21-201ENST00000330374 FRMPD1Q5SYB0 1578 aa9.4□□□□□ -0.91
VMA21-201ENST00000330374 SALL3Q9BXA9 1300 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 KIF20BQ96Q89 1820 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 SEMA3EO15041 775 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 FOSBP53539 338 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 PHAXQ9H814 394 aaKnown RBP9.39□□□□□ -0.91
VMA21-201ENST00000330374 PDRG1Q9NUG6 133 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 ANKRD26Q9UPS8 1709 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 MYO5BQ9ULV0 1848 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 ANXA1P04083 346 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 YEATS2Q9ULM3 1422 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 PIK3C2BO00750 1634 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 SGSM2O43147 1006 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 GTF2F1P35269 517 aaKnown RBP eCLIP9.39□□□□□ -0.91
VMA21-201ENST00000330374 PTH1RQ03431 593 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 NUTM2GQ5VZR2 741 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 LARP1BQ659C4 914 aaKnown RBP9.39□□□□□ -0.91
VMA21-201ENST00000330374 MTMR6Q9Y217 621 aa9.39□□□□□ -0.91
VMA21-201ENST00000330374 CEBPZQ03701 1054 aaKnown RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 ANO6Q4KMQ2 910 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 NUP62CLQ9H1M0 184 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 RAD50Q92878 1312 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 UTP14CQ5TAP6 766 aaKnown RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 RHPN1Q8TCX5 695 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 USP44Q9H0E7 712 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 MAP3K19Q56UN5 1328 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 EDC4Q6P2E9 1401 aaKnown RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 TNNT1P13805 278 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 TYRO3Q06418 890 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 COL9A3Q14050 684 aaPredicted RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 MAP3K11Q16584 847 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 TPD52L1Q16890 204 aaPredicted RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 CNTROBQ8N137 903 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 DACT1Q9NYF0 836 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 CGNQ9P2M7 1197 aaKnown RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 CDK12Q9NYV4 1490 aaPredicted RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 CPS1P31327 1500 aa9.38□□□□□ -0.91
VMA21-201ENST00000330374 CPSF1Q10570 1443 aaKnown RBP9.38□□□□□ -0.91
VMA21-201ENST00000330374 CCDC30Q5VVM6 783 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 TTC6Q86TZ1 520 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 LSG1Q9H089 658 aaKnown RBP9.37□□□□□ -0.91
VMA21-201ENST00000330374 TNMDQ9H2S6 317 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 CDC42BPGQ6DT37 1551 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 HECW2Q9P2P5 1572 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 CDC37L1Q7L3B6 337 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 TMEM87AQ8NBN3 555 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 TTC14Q96N46 770 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 KIAA0232Q92628 1395 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 A0A087WWV3 80 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 AK7Q96M32 723 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 FUCA2Q9BTY2 467 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 PPFIA3O75145 1194 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 AMPHP49418 695 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 ME3Q16798 604 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 BICD2Q8TD16 824 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 GTPBP4Q9BZE4 634 aaKnown RBP9.37□□□□□ -0.91
VMA21-201ENST00000330374 STAP2Q9UGK3 403 aa9.37□□□□□ -0.91
VMA21-201ENST00000330374 SOS1Q07889 1333 aaPredicted RBP9.37□□□□□ -0.91
VMA21-201ENST00000330374 NCBP1Q09161 790 aaKnown RBP9.36□□□□□ -0.91
VMA21-201ENST00000330374 FAM200AQ8TCP9 573 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 DNAJC25Q9H1X3 360 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 HYPKQ9NX55 129 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 CYP46A1Q9Y6A2 500 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 NBPF7P0C2Y1 421 aaPredicted RBP9.36□□□□□ -0.91
VMA21-201ENST00000330374 E2F4Q16254 413 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 CBX8Q9HC52 389 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 MRVI1Q9Y6F6 885 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 PI4K2BQ8TCG2 481 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 KRT85P78386 507 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 ARID5BQ14865 1188 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 HDGFL1Q5TGJ6 251 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 TRMT1Q9NXH9 659 aaKnown RBP9.36□□□□□ -0.91
VMA21-201ENST00000330374 MTMR7Q9Y216 660 aa9.36□□□□□ -0.91
VMA21-201ENST00000330374 ALKQ9UM73 1620 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 CCDC112Q8NEF3 446 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 DDX11Q96FC9 970 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 PCMTD1Q96MG8 357 aaPredicted RBP9.35□□□□□ -0.91
VMA21-201ENST00000330374 RAB11FIP3O75154 756 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 SPATA32Q96LK8 384 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 PA2G4Q9UQ80 394 aaKnown RBP9.35□□□□□ -0.91
VMA21-201ENST00000330374 PRR36Q9H6K5 1346 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 GTPBP6O43824 516 aaPredicted RBP9.35□□□□□ -0.91
VMA21-201ENST00000330374 USHBP1Q8N6Y0 703 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 SYTL4Q96C24 671 aaPredicted RBP9.35□□□□□ -0.91
VMA21-201ENST00000330374 CLIP2Q9UDT6 1046 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 ATP7BP35670 1465 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 ACEP12821 1306 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 TTC21BQ7Z4L5 1316 aa9.35□□□□□ -0.91
VMA21-201ENST00000330374 FILIP1Q7Z7B0 1213 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 AATKQ6ZMQ8 1374 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 MKRN4PQ13434 485 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 361.7 ms