RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W PUS6P53294 404 aa8.7□□□□□ -1.02
UFD1YGR048W GTR1Q00582 310 aa8.7□□□□□ -1.02
UFD1YGR048W YPL109CQ02981 657 aa8.7□□□□□ -1.02
UFD1YGR048W RAD53P22216 821 aa8.69□□□□□ -1.02
UFD1YGR048W RME1P32338 300 aaKnown RBP8.69□□□□□ -1.02
UFD1YGR048W RIB7P33312 244 aa8.69□□□□□ -1.02
UFD1YGR048W PET112P33893 541 aa8.69□□□□□ -1.02
UFD1YGR048W VPS35P34110 944 aa8.69□□□□□ -1.02
UFD1YGR048W TDA11P38854 504 aa8.69□□□□□ -1.02
UFD1YGR048W KAP123P40069 1113 aaKnown RBP8.69□□□□□ -1.02
UFD1YGR048W DAS1P47005 663 aa8.69□□□□□ -1.02
UFD1YGR048W MTR4P47047 1073 aaKnown RBP8.69□□□□□ -1.02
UFD1YGR048W CSN12P47130 423 aa8.69□□□□□ -1.02
UFD1YGR048W PCL10P53124 433 aa8.69□□□□□ -1.02
UFD1YGR048W LSG1P53145 640 aaKnown RBP8.69□□□□□ -1.02
UFD1YGR048W YML119WQ03208 357 aa8.69□□□□□ -1.02
UFD1YGR048W PKH3Q03306 898 aaPredicted RBP8.69□□□□□ -1.02
UFD1YGR048W UTP4Q06679 776 aaKnown RBP8.69□□□□□ -1.02
UFD1YGR048W RIM20Q12033 661 aa8.69□□□□□ -1.02
UFD1YGR048W GNT1Q12096 491 aa8.69□□□□□ -1.02
UFD1YGR048W IES3Q12345 250 aa8.69□□□□□ -1.02
UFD1YGR048W YOL098CQ12496 1037 aa8.69□□□□□ -1.02
UFD1YGR048W CDC8P00572 216 aa8.68□□□□□ -1.02
UFD1YGR048W TOM70P07213 617 aaKnown RBP8.68□□□□□ -1.02
UFD1YGR048W ADE2P21264 571 aaKnown RBP8.68□□□□□ -1.02
UFD1YGR048W MRP8P35719 219 aa8.68□□□□□ -1.02
UFD1YGR048W ATG14P38270 344 aa8.68□□□□□ -1.02
UFD1YGR048W MCX1P38323 520 aaPredicted RBP8.68□□□□□ -1.02
UFD1YGR048W SMF1P38925 575 aa8.68□□□□□ -1.02
UFD1YGR048W SCS2P40075 244 aaKnown RBP8.68□□□□□ -1.02
UFD1YGR048W SAP185P40856 1058 aa8.68□□□□□ -1.02
UFD1YGR048W ENP2P48234 707 aaKnown RBP8.68□□□□□ -1.02
UFD1YGR048W ERP6P53198 216 aa8.68□□□□□ -1.02
UFD1YGR048W BTN2P53286 410 aa8.68□□□□□ -1.02
UFD1YGR048W YKR005CQ02203 525 aa8.68□□□□□ -1.02
UFD1YGR048W PLP1Q04004 230 aa8.68□□□□□ -1.02
UFD1YGR048W TRS120Q04183 1289 aa8.68□□□□□ -1.02
UFD1YGR048W SPP382Q06411 708 aaPredicted RBP8.68□□□□□ -1.02
UFD1YGR048W VAM6Q07468 1049 aa8.68□□□□□ -1.02
UFD1YGR048W TMA16Q08687 178 aa8.68□□□□□ -1.02
UFD1YGR048W VAN1P23642 535 aa8.67□□□□□ -1.02
UFD1YGR048W NPL6P32832 435 aa8.67□□□□□ -1.02
UFD1YGR048W URB1P34241 1764 aaKnown RBP8.67□□□□□ -1.02
UFD1YGR048W SQT1P35184 431 aa8.67□□□□□ -1.02
UFD1YGR048W OSH3P38713 996 aaKnown RBP8.67□□□□□ -1.02
UFD1YGR048W ETP1P38748 585 aaKnown RBP8.67□□□□□ -1.02
UFD1YGR048W AXL1P40851 1208 aa8.67□□□□□ -1.02
UFD1YGR048W TMA22P47089 198 aaPredicted RBP8.67□□□□□ -1.02
UFD1YGR048W ENT3P47160 408 aa8.67□□□□□ -1.02
UFD1YGR048W HGH1P48362 394 aaKnown RBP8.67□□□□□ -1.02
UFD1YGR048W DSD1P53095 428 aa8.67□□□□□ -1.02
UFD1YGR048W YNL144CP53907 740 aa8.67□□□□□ -1.02
UFD1YGR048W YML108WQ03759 105 aa8.67□□□□□ -1.02
UFD1YGR048W YPR097WQ06839 1073 aa8.67□□□□□ -1.02
UFD1YGR048W SGT2Q12118 346 aaKnown RBP8.67□□□□□ -1.02
UFD1YGR048W FAR1P21268 830 aa8.66□□□□□ -1.02
UFD1YGR048W ASF1P32447 279 aa8.66□□□□□ -1.02
UFD1YGR048W GRX4P32642 244 aa8.66□□□□□ -1.02
UFD1YGR048W HSM3P38348 480 aa8.66□□□□□ -1.02
UFD1YGR048W YHL017WP38745 532 aa8.66□□□□□ -1.02
UFD1YGR048W MAM1P40065 302 aa8.66□□□□□ -1.02
UFD1YGR048W HXT10P43581 546 aa8.66□□□□□ -1.02
UFD1YGR048W HFM1P51979 1187 aa8.66□□□□□ -1.02
UFD1YGR048W RRP9Q06506 573 aaKnown RBP8.66□□□□□ -1.02
UFD1YGR048W NOB1Q08444 459 aaKnown RBP8.66□□□□□ -1.02
UFD1YGR048W GPN2Q08726 347 aaPredicted RBP8.66□□□□□ -1.02
UFD1YGR048W BUD7Q08754 746 aa8.66□□□□□ -1.02
UFD1YGR048W SEC8P32855 1065 aa8.65□□□□□ -1.02
UFD1YGR048W HEK2P38199 381 aaKnown RBP RIP-Chip data8.65□□□□□ -1.02not detected
UFD1YGR048W RPA14P50106 137 aa8.65□□□□□ -1.02
UFD1YGR048W ZDS1P50111 915 aaKnown RBP8.65□□□□□ -1.02
UFD1YGR048W ZPR1P53303 486 aaKnown RBP8.65□□□□□ -1.02
UFD1YGR048W SFB2P53953 876 aa8.65□□□□□ -1.02
UFD1YGR048W YOR296WQ08748 1289 aa8.65□□□□□ -1.02
UFD1YGR048W DBP7P36120 742 aaKnown RBP8.64□□□□□ -1.03
UFD1YGR048W FZO1P38297 855 aa8.64□□□□□ -1.03
UFD1YGR048W EFM2P38347 419 aa8.64□□□□□ -1.03
UFD1YGR048W RRD1P40454 393 aaKnown RBP8.64□□□□□ -1.03
UFD1YGR048W EFM4P40516 257 aa8.64□□□□□ -1.03
UFD1YGR048W VTC2P43585 828 aa8.64□□□□□ -1.03
UFD1YGR048W FMS1P50264 508 aa8.64□□□□□ -1.03
UFD1YGR048W COG6P53959 839 aa8.64□□□□□ -1.03
UFD1YGR048W UBP3Q01477 912 aaKnown RBP RIP-Chip data8.64□□□□□ -1.03not detected
UFD1YGR048W HED1Q03937 162 aa8.64□□□□□ -1.03
UFD1YGR048W POB3Q04636 552 aaKnown RBP8.64□□□□□ -1.03
UFD1YGR048W YLH47Q06493 454 aa8.64□□□□□ -1.03
UFD1YGR048W BDF2Q07442 638 aa8.64□□□□□ -1.03
UFD1YGR048W ALR1Q08269 859 aa8.64□□□□□ -1.03
UFD1YGR048W DNL4Q08387 944 aaPredicted RBP8.64□□□□□ -1.03
UFD1YGR048W TAF10Q12030 206 aa8.64□□□□□ -1.03
UFD1YGR048W DCS2Q12123 353 aa8.64□□□□□ -1.03
UFD1YGR048W MSH5Q12175 901 aa8.64□□□□□ -1.03
UFD1YGR048W YRF1-2P40105 1681 aa8.64□□□□□ -1.03
UFD1YGR048W YPR089WO13585 888 aa8.63□□□□□ -1.03
UFD1YGR048W RPB2P08518 1224 aaKnown RBP8.63□□□□□ -1.03
UFD1YGR048W ADH4P10127 382 aa8.63□□□□□ -1.03
UFD1YGR048W ARG8P18544 423 aa8.63□□□□□ -1.03
UFD1YGR048W PRP4P20053 465 aaKnown RBP8.63□□□□□ -1.03
UFD1YGR048W VPH2P32341 215 aa8.63□□□□□ -1.03
UFD1YGR048W NIP1P32497 812 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 5,963 RNA–protein pairs in 60.3 ms