RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	YGR237C	P50089	785 aa		7.38	□□□□□ -1.23
TRP1	YDR007W	LCD1	Q04377	747 aa		7.38	□□□□□ -1.23
TRP1	YDR007W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	7.37	□□□□□ -1.23	not detected
TRP1	YDR007W	MEF1	P25039	761 aa		7.37	□□□□□ -1.23
TRP1	YDR007W	MRC1	P25588	1096 aa		7.37	□□□□□ -1.23
TRP1	YDR007W	GRX7	P38068	203 aa		7.37	□□□□□ -1.23
TRP1	YDR007W	MXR1	P40029	184 aa		7.37	□□□□□ -1.23
TRP1	YDR007W	ALG2	P43636	503 aa		7.37	□□□□□ -1.23
TRP1	YDR007W	NUP145	P49687	1317 aa		7.36	□□□□□ -1.23
TRP1	YDR007W	PAF1	P38351	445 aa		7.36	□□□□□ -1.23
TRP1	YDR007W	FOL1	P53848	824 aa		7.36	□□□□□ -1.23
TRP1	YDR007W	THI73	Q07904	523 aa		7.36	□□□□□ -1.23
TRP1	YDR007W	HRK1	Q08732	759 aa	Known RBP	7.36	□□□□□ -1.23
TRP1	YDR007W	VBA3	P25594	458 aa		7.35	□□□□□ -1.23
TRP1	YDR007W	SMY2	P32909	740 aa	Known RBP	7.35	□□□□□ -1.23
TRP1	YDR007W	SAH1	P39954	449 aa	Known RBP	7.35	□□□□□ -1.23
TRP1	YDR007W	RPN3	P40016	523 aa	Known RBP	7.35	□□□□□ -1.23
TRP1	YDR007W	SDA1	P53313	767 aa	Known RBP	7.35	□□□□□ -1.23
TRP1	YDR007W	YOL057W	Q08225	711 aa		7.35	□□□□□ -1.23
TRP1	YDR007W	ACM1	Q08981	209 aa		7.35	□□□□□ -1.23
TRP1	YDR007W	UME1	Q03010	460 aa		7.34	□□□□□ -1.23
TRP1	YDR007W	PRO1	P32264	428 aa		7.33	□□□□□ -1.24
TRP1	YDR007W	CDC12	P32468	407 aa	Known RBP	7.33	□□□□□ -1.24
TRP1	YDR007W	GPT2	P36148	743 aa		7.33	□□□□□ -1.24
TRP1	YDR007W	RRM3	P38766	723 aa		7.33	□□□□□ -1.24
TRP1	YDR007W	NMD3	P38861	518 aa	Known RBP	7.33	□□□□□ -1.24
TRP1	YDR007W	YJL045W	P47052	634 aa		7.33	□□□□□ -1.24
TRP1	YDR007W	HOS3	Q02959	697 aa	Known RBP	7.33	□□□□□ -1.24
TRP1	YDR007W	MTC5	Q03897	1148 aa		7.33	□□□□□ -1.24
TRP1	YDR007W	YLR001C	Q07895	862 aa		7.33	□□□□□ -1.24
TRP1	YDR007W	REC104	P33323	182 aa		7.32	□□□□□ -1.24
TRP1	YDR007W	SEC26	P41810	973 aa	Known RBP	7.32	□□□□□ -1.24
TRP1	YDR007W	JJJ3	P47138	172 aa		7.32	□□□□□ -1.24
TRP1	YDR007W	NCE103	P53615	221 aa		7.32	□□□□□ -1.24
TRP1	YDR007W	ALO1	P54783	526 aa	Known RBP	7.32	□□□□□ -1.24
TRP1	YDR007W	TMA17	Q12513	150 aa		7.32	□□□□□ -1.24
TRP1	YDR007W	THS1	P04801	734 aa	Known RBP	7.31	□□□□□ -1.24
TRP1	YDR007W	SLA2	P33338	968 aa		7.31	□□□□□ -1.24
TRP1	YDR007W	SPC29	P33419	253 aa		7.31	□□□□□ -1.24
TRP1	YDR007W	TOK1	P40310	691 aa		7.31	□□□□□ -1.24
TRP1	YDR007W	CCM1	P48237	864 aa	Predicted RBP	7.31	□□□□□ -1.24
TRP1	YDR007W	BUL2	Q03758	920 aa	Known RBP	7.31	□□□□□ -1.24
TRP1	YDR007W	FAP7	Q12055	197 aa	Predicted RBP	7.31	□□□□□ -1.24
TRP1	YDR007W	CDC9	P04819	755 aa		7.3	□□□□□ -1.24
TRP1	YDR007W	UGA2	P38067	497 aa		7.3	□□□□□ -1.24
TRP1	YDR007W	TPM2	P40414	161 aa		7.3	□□□□□ -1.24
TRP1	YDR007W	TNA1	P53322	534 aa		7.3	□□□□□ -1.24
TRP1	YDR007W	TPP1	Q03796	238 aa		7.3	□□□□□ -1.24
TRP1	YDR007W	HRQ1	Q05549	1077 aa		7.3	□□□□□ -1.24
TRP1	YDR007W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	7.29	□□□□□ -1.24	not detected
TRP1	YDR007W	YSC84	P32793	468 aa		7.29	□□□□□ -1.24
TRP1	YDR007W	AFR1	P33304	620 aa		7.29	□□□□□ -1.24
TRP1	YDR007W	YKL151C	P36059	337 aa		7.29	□□□□□ -1.24
TRP1	YDR007W	PUS7	Q08647	676 aa	Known RBP	7.29	□□□□□ -1.24
TRP1	YDR007W	TY1A-NL1	Q12391	440 aa	Known RBP	7.29	□□□□□ -1.24
TRP1	YDR007W	DPH6	Q12429	685 aa		7.29	□□□□□ -1.24
TRP1	YDR007W	SRD1	P09007	221 aa		7.28	□□□□□ -1.24
TRP1	YDR007W	RAD18	P10862	487 aa		7.28	□□□□□ -1.24
TRP1	YDR007W	YEL1	P34225	687 aa		7.28	□□□□□ -1.24
TRP1	YDR007W	TYS1	P36421	394 aa	Known RBP	7.28	□□□□□ -1.24
TRP1	YDR007W	BAP2	P38084	609 aa		7.28	□□□□□ -1.24
TRP1	YDR007W	ERT1	P38140	529 aa		7.28	□□□□□ -1.24
TRP1	YDR007W	DAM1	P53267	343 aa		7.28	□□□□□ -1.24
TRP1	YDR007W	RPS4A	P0CX35	261 aa	Known RBP	7.27	□□□□□ -1.25
TRP1	YDR007W	RPS4B	P0CX36	261 aa	Known RBP	7.27	□□□□□ -1.25
TRP1	YDR007W	NPP1	P25353	742 aa		7.27	□□□□□ -1.25
TRP1	YDR007W	GAR1	P28007	205 aa	Known RBP	7.27	□□□□□ -1.25
TRP1	YDR007W	MGS1	P40151	587 aa		7.27	□□□□□ -1.25
TRP1	YDR007W	ALT1	P52893	592 aa		7.27	□□□□□ -1.25
TRP1	YDR007W	GPG1	P53130	126 aa		7.27	□□□□□ -1.25
TRP1	YDR007W	YGR283C	P53336	341 aa	Predicted RBP	7.27	□□□□□ -1.25
TRP1	YDR007W	YLL058W	Q12198	575 aa		7.27	□□□□□ -1.25
TRP1	YDR007W	TCB3	Q03640	1545 aa	Known RBP	7.27	□□□□□ -1.25
TRP1	YDR007W	ENP1	P38333	483 aa	Known RBP	7.26	□□□□□ -1.25
TRP1	YDR007W	YFL054C	P43549	646 aa		7.26	□□□□□ -1.25
TRP1	YDR007W	GYP8	P43570	497 aa		7.26	□□□□□ -1.25
TRP1	YDR007W	YJR120W	P47157	116 aa		7.26	□□□□□ -1.25
TRP1	YDR007W	HFD1	Q04458	532 aa		7.26	□□□□□ -1.25
TRP1	YDR007W	COQ4	O13525	335 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	PCL2	P25693	308 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	STO1	P34160	861 aa	Known RBP	7.25	□□□□□ -1.25
TRP1	YDR007W	EMC3	P36039	253 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	YBR238C	P38330	731 aa	Known RBP	7.25	□□□□□ -1.25
TRP1	YDR007W	BOI2	P39969	1040 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	NIT3	P49954	291 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	MET13	P53128	600 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	HPF1	Q05164	967 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	MDM38	Q08179	573 aa		7.25	□□□□□ -1.25
TRP1	YDR007W	SNF5	P18480	905 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	SFL1	P20134	766 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	MTC2	P34246	357 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	YKR078W	P36158	585 aa	Known RBP	7.24	□□□□□ -1.25
TRP1	YDR007W	TSL1	P38427	1098 aa	Known RBP	7.24	□□□□□ -1.25
TRP1	YDR007W	CAF16	P43569	289 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	GYP7	P48365	746 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	PEX8	P53248	589 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	ATP25	Q03153	612 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	YDR514C	Q04408	483 aa		7.24	□□□□□ -1.25
TRP1	YDR007W	URN1	Q06525	465 aa	Known RBP	7.24	□□□□□ -1.25
TRP1	YDR007W	RSC3	Q06639	885 aa		7.24	□□□□□ -1.25

Retrieved 100 of 5,963 RNA–protein pairs in 10 ms