RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	TCB3	Q03640	1545 aa	Known RBP	4.61	□□□□□ -1.67
TSR1	YDL060W	CFT1	Q06632	1357 aa	Known RBP	4.6	□□□□□ -1.67
TSR1	YDL060W	SEG2	P34250	1132 aa		4.6	□□□□□ -1.67
TSR1	YDL060W	MCM7	P38132	845 aa		4.6	□□□□□ -1.67
TSR1	YDL060W	ORC3	P54790	616 aa		4.6	□□□□□ -1.67
TSR1	YDL060W	SPS1	P08458	490 aa		4.6	□□□□□ -1.67
TSR1	YDL060W	RAD4	P14736	754 aa		4.6	□□□□□ -1.67
TSR1	YDL060W	MLS1	P30952	554 aa		4.6	□□□□□ -1.67
TSR1	YDL060W	RSC58	Q07979	502 aa		4.6	□□□□□ -1.67
TSR1	YDL060W	PHO8	P11491	566 aa		4.59	□□□□□ -1.67
TSR1	YDL060W	RPN3	P40016	523 aa	Known RBP	4.59	□□□□□ -1.67
TSR1	YDL060W	YFR016C	P43597	1233 aa	Known RBP	4.59	□□□□□ -1.67
TSR1	YDL060W	ECM16	Q04217	1267 aa	Known RBP	4.59	□□□□□ -1.67
TSR1	YDL060W	LPX1	Q12405	387 aa	Known RBP	4.59	□□□□□ -1.67
TSR1	YDL060W	DBP5	P20449	482 aa	Known RBP	4.58	□□□□□ -1.68
TSR1	YDL060W	PRI2	P20457	528 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	SEC6	P32844	805 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	ENP1	P38333	483 aa	Known RBP	4.58	□□□□□ -1.68
TSR1	YDL060W	HNT2	P49775	206 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	GDE1	Q02979	1223 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	AOS1	Q06624	347 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	YDL121C	Q07541	149 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	GAS1	P22146	559 aa	Known RBP	4.58	□□□□□ -1.68
TSR1	YDL060W	RER2	P35196	286 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	HXT13	P39924	564 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	TIM54	P47045	478 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	FAA4	P47912	694 aa	Known RBP	4.58	□□□□□ -1.68
TSR1	YDL060W	HXT17	P53631	564 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	HXT15	P54854	567 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	DNM1	P54861	757 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	TRM732	Q03496	1420 aa		4.58	□□□□□ -1.68
TSR1	YDL060W	CRP1	P38845	465 aa	Known RBP	4.57	□□□□□ -1.68
TSR1	YDL060W	PIK1	P39104	1066 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	KRI1	P42846	591 aa	Known RBP	4.57	□□□□□ -1.68
TSR1	YDL060W	GNP1	P48813	663 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	ENV11	P53246	860 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	CWC22	P53333	577 aa	Known RBP	4.57	□□□□□ -1.68
TSR1	YDL060W	KAR1	P11927	433 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	CDC34	P14682	295 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	SRM1	P21827	482 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	RPA135	P22138	1203 aa	Known RBP	4.57	□□□□□ -1.68
TSR1	YDL060W	ELM1	P32801	640 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	ETP1	P38748	585 aa	Known RBP	4.57	□□□□□ -1.68
TSR1	YDL060W	NIT1	P40447	199 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	FOL1	P53848	824 aa		4.57	□□□□□ -1.68
TSR1	YDL060W	PRS1	P32895	427 aa	Known RBP	4.56	□□□□□ -1.68
TSR1	YDL060W	YHR020W	P38708	688 aa	Known RBP	4.56	□□□□□ -1.68
TSR1	YDL060W	SNF7	P39929	240 aa	Known RBP	4.56	□□□□□ -1.68
TSR1	YDL060W	SPO20	Q04359	397 aa		4.56	□□□□□ -1.68
TSR1	YDL060W	TDA5	Q06417	326 aa	Known RBP	4.56	□□□□□ -1.68
TSR1	YDL060W	YLR125W	Q12138	136 aa		4.56	□□□□□ -1.68
TSR1	YDL060W	LYP1	P32487	611 aa		4.56	□□□□□ -1.68
TSR1	YDL060W	NAN1	Q02931	896 aa	Known RBP	4.56	□□□□□ -1.68
TSR1	YDL060W	TIF35	Q04067	274 aa	Known RBP	4.56	□□□□□ -1.68
TSR1	YDL060W	STH1	P32597	1359 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	GAL11	P19659	1081 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	RNQ1	P25367	405 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	THI4	P32318	326 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	FUN12	P39730	1002 aa	Known RBP	4.55	□□□□□ -1.68
TSR1	YDL060W	SPF1	P39986	1215 aa	Known RBP	4.55	□□□□□ -1.68
TSR1	YDL060W	CHZ1	P40019	153 aa	Predicted RBP	4.55	□□□□□ -1.68
TSR1	YDL060W	SEC26	P41810	973 aa	Known RBP	4.55	□□□□□ -1.68
TSR1	YDL060W	TYW3	P53177	273 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	SNO2	P53823	222 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	SPP382	Q06411	708 aa	Predicted RBP	4.55	□□□□□ -1.68
TSR1	YDL060W	RCL1	Q08096	367 aa	Predicted RBP	4.55	□□□□□ -1.68
TSR1	YDL060W	OPI10	Q08202	246 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	YER152C	P10356	443 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	IME2	P32581	645 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	YKL069W	P36088	180 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	MRPL22	P53881	309 aa		4.55	□□□□□ -1.68
TSR1	YDL060W	BAP2	P38084	609 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	FUI1	P38196	639 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	FLC1	Q08967	793 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	GNT1	Q12096	491 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	NOP14	Q99207	810 aa	Known RBP	4.54	□□□□□ -1.68
TSR1	YDL060W	TAF2	P23255	1407 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	ERR1	P0CX10	437 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	ERR2	P0CX11	437 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	UBP5	P39944	805 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	MPH1	P40562	993 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	YGR053C	P53234	283 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	YNR029C	P53729	429 aa	Known RBP	4.54	□□□□□ -1.68
TSR1	YDL060W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
TSR1	YDL060W	RSM24	Q03976	319 aa		4.54	□□□□□ -1.68
TSR1	YDL060W	HSL1	P34244	1518 aa		4.53	□□□□□ -1.68
TSR1	YDL060W	TRP2	P00899	507 aa	Known RBP	4.53	□□□□□ -1.68
TSR1	YDL060W	INO1	P11986	533 aa		4.53	□□□□□ -1.68
TSR1	YDL060W	RFC5	P38251	354 aa		4.53	□□□□□ -1.68
TSR1	YDL060W	RSP5	P39940	809 aa	Known RBP	4.53	□□□□□ -1.68
TSR1	YDL060W	SNF5	P18480	905 aa		4.53	□□□□□ -1.68
TSR1	YDL060W	DUT1	P33317	147 aa		4.53	□□□□□ -1.68
TSR1	YDL060W	PAF1	P38351	445 aa		4.53	□□□□□ -1.68
TSR1	YDL060W	AIM21	P40563	679 aa		4.53	□□□□□ -1.68
TSR1	YDL060W	BRE1	Q07457	700 aa	Known RBP	4.53	□□□□□ -1.68
TSR1	YDL060W	ADR1	P07248	1323 aa		4.53	□□□□□ -1.69
TSR1	YDL060W	SEC3	P33332	1336 aa	Known RBP	4.53	□□□□□ -1.69
TSR1	YDL060W	PDR10	P51533	1564 aa		4.52	□□□□□ -1.69
TSR1	YDL060W	THS1	P04801	734 aa	Known RBP	4.52	□□□□□ -1.69
TSR1	YDL060W	KIN2	P13186	1147 aa	Known RBP	4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms