RNA–Protein interactions for RNA: ENST00000580986.1

CCDC47-203, Transcript of coiled-coil domain containing 47, humanhuman

TSL 4

Gene CCDC47, Length 552 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-203ENST00000580986 RREB1Q92766 1687 aa13.51□□□□□ -0.25
CCDC47-203ENST00000580986 FANCIQ9NVI1 1328 aa13.51□□□□□ -0.25
CCDC47-203ENST00000580986 MBIPQ9NS73 344 aa13.51□□□□□ -0.25
CCDC47-203ENST00000580986 ASAP1Q9ULH1 1129 aa13.51□□□□□ -0.25
CCDC47-203ENST00000580986 COL5A3P25940 1745 aaPredicted RBP13.5□□□□□ -0.25
CCDC47-203ENST00000580986 TJP1Q07157 1748 aa13.5□□□□□ -0.25
CCDC47-203ENST00000580986 EIF4A1P60842 406 aaKnown RBP13.5□□□□□ -0.25
CCDC47-203ENST00000580986 SLC27A3Q5K4L6 730 aa13.5□□□□□ -0.25
CCDC47-203ENST00000580986 PTF1AQ7RTS3 328 aa13.5□□□□□ -0.25
CCDC47-203ENST00000580986 FMNL2Q96PY5 1086 aa13.5□□□□□ -0.25
CCDC47-203ENST00000580986 CHMP4AQ9BY43 222 aa13.5□□□□□ -0.25
CCDC47-203ENST00000580986 TAF1LQ8IZX4 1826 aa13.49□□□□□ -0.25
CCDC47-203ENST00000580986 CT47B1P0C2W7 299 aaPredicted RBP13.49□□□□□ -0.25
CCDC47-203ENST00000580986 SLC39A6Q13433 755 aa13.49□□□□□ -0.25
CCDC47-203ENST00000580986 SF3B2Q13435 895 aaKnown RBP13.49□□□□□ -0.25
CCDC47-203ENST00000580986 DUSP27Q5VZP5 1158 aa13.49□□□□□ -0.25
CCDC47-203ENST00000580986 ILDR2Q71H61 639 aa13.49□□□□□ -0.25
CCDC47-203ENST00000580986 ZNF496Q96IT1 587 aaPredicted RBP13.49□□□□□ -0.25
CCDC47-203ENST00000580986 TEX13AQ9BXU3 409 aaPredicted RBP13.49□□□□□ -0.25
CCDC47-203ENST00000580986 LOC102724428A0A0B4J2F2 783 aa13.48□□□□□ -0.25
CCDC47-203ENST00000580986 APBA3O96018 575 aa13.48□□□□□ -0.25
CCDC47-203ENST00000580986 BAG6P46379 1132 aa13.48□□□□□ -0.25
CCDC47-203ENST00000580986 SIK1P57059 783 aa13.48□□□□□ -0.25
CCDC47-203ENST00000580986 ZNF428Q96B54 188 aa13.48□□□□□ -0.25
CCDC47-203ENST00000580986 SENP3-EIF4A1A0A087X0R7 540 aa13.47□□□□□ -0.25
CCDC47-203ENST00000580986 GIGYF1O75420 1035 aaPredicted RBP13.47□□□□□ -0.25
CCDC47-203ENST00000580986 SNRPA1P09661 255 aaKnown RBP13.47□□□□□ -0.25
CCDC47-203ENST00000580986 UPF1Q92900 1129 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCDC47-203ENST00000580986 LAS1LQ9Y4W2 734 aaKnown RBP13.47□□□□□ -0.25
CCDC47-203ENST00000580986 KCNQ3O43525 872 aa13.46□□□□□ -0.25
CCDC47-203ENST00000580986 CLCN6P51797 869 aa13.46□□□□□ -0.25
CCDC47-203ENST00000580986 TSR2Q969E8 191 aaKnown RBP13.46□□□□□ -0.25
CCDC47-203ENST00000580986 CDCA7LQ96GN5 454 aa13.46□□□□□ -0.25
CCDC47-203ENST00000580986 MIS18AQ9NYP9 233 aa13.46□□□□□ -0.25
CCDC47-203ENST00000580986 ERBB4Q15303 1308 aa13.45□□□□□ -0.26
CCDC47-203ENST00000580986 PTCD1O75127 700 aaKnown RBP13.45□□□□□ -0.26
CCDC47-203ENST00000580986 SLC4A9Q96Q91 983 aa13.45□□□□□ -0.26
CCDC47-203ENST00000580986 CAMKK2Q96RR4 588 aa13.45□□□□□ -0.26
CCDC47-203ENST00000580986 NUP188Q5SRE5 1749 aa13.44□□□□□ -0.26
CCDC47-203ENST00000580986 CACNA1FO60840 1977 aa13.44□□□□□ -0.26
CCDC47-203ENST00000580986 TXNRD1Q16881 649 aa13.44□□□□□ -0.26
CCDC47-203ENST00000580986 CCNL1Q9UK58 526 aaPredicted RBP13.44□□□□□ -0.26
CCDC47-203ENST00000580986 C4BP0C0L5 1744 aa13.44□□□□□ -0.26
CCDC47-203ENST00000580986 CNTNAP4Q9C0A0 1308 aa13.43□□□□□ -0.26
CCDC47-203ENST00000580986 SPDYE4A6NLX3 237 aa13.43□□□□□ -0.26
CCDC47-203ENST00000580986 STARD3NLO95772 234 aa13.43□□□□□ -0.26
CCDC47-203ENST00000580986 ATP6V1AP38606 617 aa13.43□□□□□ -0.26
CCDC47-203ENST00000580986 QSER1Q2KHR3 1735 aa13.43□□□□□ -0.26
CCDC47-203ENST00000580986 RC3H1Q5TC82 1133 aaKnown RBP13.43□□□□□ -0.26
CCDC47-203ENST00000580986 PROM2Q8N271 834 aa13.43□□□□□ -0.26
CCDC47-203ENST00000580986 EXOSC9Q06265 439 aaKnown RBP13.42□□□□□ -0.26
CCDC47-203ENST00000580986 TWISTNBQ3B726 338 aaPredicted RBP13.42□□□□□ -0.26
CCDC47-203ENST00000580986 C8orf58Q8NAV2 365 aa13.42□□□□□ -0.26
CCDC47-203ENST00000580986 YTHDC1Q96MU7 727 aaKnown RBP13.42□□□□□ -0.26
CCDC47-203ENST00000580986 CREBZFQ9NS37 354 aa13.42□□□□□ -0.26
CCDC47-203ENST00000580986 VAMP4O75379 141 aa13.41□□□□□ -0.26
CCDC47-203ENST00000580986 POTEIP0CG38 1075 aa13.41□□□□□ -0.26
CCDC47-203ENST00000580986 CYP19A1P11511 503 aaPredicted RBP13.41□□□□□ -0.26
CCDC47-203ENST00000580986 ITPK1Q13572 414 aa13.41□□□□□ -0.26
CCDC47-203ENST00000580986 LRRC4BQ9NT99 713 aa13.41□□□□□ -0.26
CCDC47-203ENST00000580986 EN1Q05925 392 aaPredicted RBP13.4□□□□□ -0.26
CCDC47-203ENST00000580986 KRT24Q2M2I5 525 aa13.4□□□□□ -0.26
CCDC47-203ENST00000580986 CCDC30Q5VVM6 783 aa13.4□□□□□ -0.26
CCDC47-203ENST00000580986 DNAJC10Q8IXB1 793 aa13.4□□□□□ -0.26
CCDC47-203ENST00000580986 TSPYL6Q8N831 410 aa13.4□□□□□ -0.26
CCDC47-203ENST00000580986 UBR3Q6ZT12 1888 aa13.4□□□□□ -0.26
CCDC47-203ENST00000580986 MYH14Q7Z406 1995 aaKnown RBP13.4□□□□□ -0.27
CCDC47-203ENST00000580986 BRPF1P55201 1214 aaPredicted RBP13.39□□□□□ -0.27
CCDC47-203ENST00000580986 EZH2Q15910 746 aaKnown RBP13.39□□□□□ -0.27
CCDC47-203ENST00000580986 ALDH1L2Q3SY69 923 aa13.39□□□□□ -0.27
CCDC47-203ENST00000580986 HDGFL1Q5TGJ6 251 aa13.39□□□□□ -0.27
CCDC47-203ENST00000580986 LINC00116Q8NCU8 138 aa13.39□□□□□ -0.27
CCDC47-203ENST00000580986 USP16Q9Y5T5 823 aa13.39□□□□□ -0.27
CCDC47-203ENST00000580986 CRKLP46109 303 aaKnown RBP13.38□□□□□ -0.27
CCDC47-203ENST00000580986 DEFB132Q7Z7B7 95 aa13.38□□□□□ -0.27
CCDC47-203ENST00000580986 CCDC87Q9NVE4 849 aa13.38□□□□□ -0.27
CCDC47-203ENST00000580986 DBF4Q9UBU7 674 aaPredicted RBP13.38□□□□□ -0.27
CCDC47-203ENST00000580986 PRAMEF22A3QJZ6 481 aa13.37□□□□□ -0.27
CCDC47-203ENST00000580986 RGL2O15211 777 aa13.37□□□□□ -0.27
CCDC47-203ENST00000580986 IL6STP40189 918 aaPredicted RBP13.37□□□□□ -0.27
CCDC47-203ENST00000580986 INTS5Q6P9B9 1019 aaKnown RBP13.37□□□□□ -0.27
CCDC47-203ENST00000580986 DDX21Q9NR30 783 aaKnown RBP eCLIP13.37□□□□□ -0.27
CCDC47-203ENST00000580986 RPS6KA4O75676 772 aa13.36□□□□□ -0.27
CCDC47-203ENST00000580986 SSFA2P28290 1259 aa13.36□□□□□ -0.27
CCDC47-203ENST00000580986 LRP10Q7Z4F1 713 aa13.36□□□□□ -0.27
CCDC47-203ENST00000580986 DCBLD2Q96PD2 775 aa13.36□□□□□ -0.27
CCDC47-203ENST00000580986 TUBGCP6Q96RT7 1819 aa13.35□□□□□ -0.27
CCDC47-203ENST00000580986 ELL2O00472 640 aaPredicted RBP13.35□□□□□ -0.27
CCDC47-203ENST00000580986 EIF5P55010 431 aaKnown RBP13.35□□□□□ -0.27
CCDC47-203ENST00000580986 PDIA6Q15084 440 aa13.35□□□□□ -0.27
CCDC47-203ENST00000580986 ZNF579Q8NAF0 562 aaKnown RBP13.35□□□□□ -0.27
CCDC47-203ENST00000580986 FLAD1Q8NFF5 587 aa13.35□□□□□ -0.27
CCDC47-203ENST00000580986 STK31Q9BXU1 1019 aa13.35□□□□□ -0.27
CCDC47-203ENST00000580986 HYPKQ9NX55 129 aa13.35□□□□□ -0.27
CCDC47-203ENST00000580986 ZBTB1Q9Y2K1 713 aa13.35□□□□□ -0.27
CCDC47-203ENST00000580986 C4AP0C0L4 1744 aa13.35□□□□□ -0.27
CCDC47-203ENST00000580986 NBPF26B4DH59 902 aa13.34□□□□□ -0.27
CCDC47-203ENST00000580986 SOCS7O14512 581 aa13.34□□□□□ -0.27
CCDC47-203ENST00000580986 A1BGP04217 495 aa13.34□□□□□ -0.27
CCDC47-203ENST00000580986 EIF2S2P20042 333 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms