RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 LAMC1P11047 1609 aa16.17■□□□□ 0.18
GPC1-209ENST00000495100 HSP90AB3PQ58FF7 597 aa16.17■□□□□ 0.18
GPC1-209ENST00000495100 BICD2Q8TD16 824 aa16.17■□□□□ 0.18
GPC1-209ENST00000495100 SNRKQ9NRH2 765 aa16.17■□□□□ 0.18
GPC1-209ENST00000495100 INO80Q9ULG1 1556 aaPredicted RBP16.17■□□□□ 0.18
GPC1-209ENST00000495100 AK2P54819 239 aa16.17■□□□□ 0.18
GPC1-209ENST00000495100 CLASP1Q7Z460 1538 aa16.17■□□□□ 0.18
GPC1-209ENST00000495100 ZFYVE9O95405 1425 aa16.17■□□□□ 0.18
GPC1-209ENST00000495100 PLEKHO1Q53GL0 409 aaPredicted RBP16.16■□□□□ 0.18
GPC1-209ENST00000495100 NLRP1Q9C000 1473 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 PTPRMP28827 1452 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 UBE3BQ7Z3V4 1068 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 NFATC2IPQ8NCF5 419 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 TTC12Q9H892 705 aaPredicted RBP16.16■□□□□ 0.18
GPC1-209ENST00000495100 PDRG1Q9NUG6 133 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 FSD2A1L4K1 749 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 H3BQV1 296 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 DNM1Q05193 864 aaKnown RBP16.16■□□□□ 0.18
GPC1-209ENST00000495100 SLFNL1Q499Z3 407 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 IFFO2Q5TF58 517 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 SYAP1Q96A49 352 aaPredicted RBP16.16■□□□□ 0.18
GPC1-209ENST00000495100 KIF1BPQ96EK5 621 aa16.16■□□□□ 0.18
GPC1-209ENST00000495100 CPS1P31327 1500 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 HECW2Q9P2P5 1572 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 RAB11FIP3O75154 756 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 CCDC173Q0VFZ6 552 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 GLIPR1L2Q4G1C9 344 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 LARP1BQ659C4 914 aaKnown RBP16.15■□□□□ 0.18
GPC1-209ENST00000495100 DDX46Q7L014 1031 aaKnown RBP16.15■□□□□ 0.18
GPC1-209ENST00000495100 ZNF592Q92610 1267 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 TSPY26PQ9H489 355 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 KIAA2012Q0VF49 1180 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 CCDC129Q6ZRS4 1044 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 MROH1Q8NDA8 1641 aa16.15■□□□□ 0.18
GPC1-209ENST00000495100 FMNL2Q96PY5 1086 aa16.14■□□□□ 0.17
GPC1-209ENST00000495100 CWC22Q9HCG8 908 aaKnown RBP16.14■□□□□ 0.17
GPC1-209ENST00000495100 CD163L1Q9NR16 1453 aa16.14■□□□□ 0.17
GPC1-209ENST00000495100 FLT4P35916 1363 aa16.14■□□□□ 0.17
GPC1-209ENST00000495100 GJB2P29033 226 aa16.14■□□□□ 0.17
GPC1-209ENST00000495100 TAF7LQ5H9L4 462 aa16.14■□□□□ 0.17
GPC1-209ENST00000495100 ANKRD24Q8TF21 1146 aa16.14■□□□□ 0.17
GPC1-209ENST00000495100 ZBTB3Q9H5J0 574 aa16.14■□□□□ 0.17
GPC1-209ENST00000495100 PNPLA6Q8IY17 1366 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 PTH1RQ03431 593 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 ADCK5Q3MIX3 580 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 COPS6Q7L5N1 327 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 ZDHHC9Q9Y397 364 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 PTMSP20962 102 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 CCT2P78371 535 aaKnown RBP16.13■□□□□ 0.17
GPC1-209ENST00000495100 ZSCAN30Q86W11 494 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 FAM184AQ8NB25 1140 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 TOMM22Q9NS69 142 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 TLR7Q9NYK1 1049 aaKnown RBP16.13■□□□□ 0.17
GPC1-209ENST00000495100 CYP46A1Q9Y6A2 500 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 PIK3R4Q99570 1358 aa16.13■□□□□ 0.17
GPC1-209ENST00000495100 FKBP4Q02790 459 aaKnown RBP eCLIP16.12■□□□□ 0.17
GPC1-209ENST00000495100 NEXMIFQ5QGS0 1516 aa16.12■□□□□ 0.17
GPC1-209ENST00000495100 CLCN1P35523 988 aa16.12■□□□□ 0.17
GPC1-209ENST00000495100 XAGE3Q8WTP9 111 aa16.12■□□□□ 0.17
GPC1-209ENST00000495100 RUFY2Q8WXA3 655 aa16.12■□□□□ 0.17
GPC1-209ENST00000495100 ABCA9Q8IUA7 1624 aa16.12■□□□□ 0.17
GPC1-209ENST00000495100 ALKQ9UM73 1620 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 A0A087WWV3 80 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 NPHP1O15259 732 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 LARGE1O95461 756 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 WASHC4Q2M389 1173 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 ERCC4Q92889 916 aaPredicted RBP16.11■□□□□ 0.17
GPC1-209ENST00000495100 ZBTB9Q96C00 473 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 BICC1Q9H694 974 aaKnown RBP16.11■□□□□ 0.17
GPC1-209ENST00000495100 FRMPD1Q5SYB0 1578 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 HAND2P61296 217 aa16.11■□□□□ 0.17
GPC1-209ENST00000495100 DDX58O95786 925 aaKnown RBP16.1■□□□□ 0.17
GPC1-209ENST00000495100 GCP02774 474 aa16.1■□□□□ 0.17
GPC1-209ENST00000495100 APPP05067 770 aa16.1■□□□□ 0.17
GPC1-209ENST00000495100 PRDM10Q9NQV6 1147 aa16.1■□□□□ 0.17
GPC1-209ENST00000495100 TMEM2Q9UHN6 1383 aa16.1■□□□□ 0.17
GPC1-209ENST00000495100 STX6O43752 255 aa16.1■□□□□ 0.17
GPC1-209ENST00000495100 SEC62Q99442 399 aaKnown RBP16.1■□□□□ 0.17
GPC1-209ENST00000495100 WDR33Q9C0J8 1336 aaKnown RBP16.09■□□□□ 0.17
GPC1-209ENST00000495100 SYT1P21579 422 aa16.09■□□□□ 0.17
GPC1-209ENST00000495100 DBF4Q9UBU7 674 aaPredicted RBP16.09■□□□□ 0.17
GPC1-209ENST00000495100 A2ML1A8K2U0 1454 aa16.09■□□□□ 0.17
GPC1-209ENST00000495100 NMIQ13287 307 aaPredicted RBP16.09■□□□□ 0.17
GPC1-209ENST00000495100 ANKLE2Q86XL3 938 aa16.09■□□□□ 0.17
GPC1-209ENST00000495100 ARHGEF40Q8TER5 1519 aa16.09■□□□□ 0.17
GPC1-209ENST00000495100 ZRSR1Q15695 479 aaKnown RBP16.08■□□□□ 0.17
GPC1-209ENST00000495100 ECHDC1Q9NTX5 307 aa16.08■□□□□ 0.17
GPC1-209ENST00000495100 SNX14Q9Y5W7 946 aa16.08■□□□□ 0.17
GPC1-209ENST00000495100 UQCRHLA0A096LP55 91 aa16.08■□□□□ 0.16
GPC1-209ENST00000495100 UQCRHP07919 91 aa16.08■□□□□ 0.16
GPC1-209ENST00000495100 BLOC1S2Q6QNY1 142 aa16.08■□□□□ 0.16
GPC1-209ENST00000495100 RBM8AQ9Y5S9 174 aaKnown RBP16.08■□□□□ 0.16
GPC1-209ENST00000495100 A0A087WZG4 1122 aa16.08■□□□□ 0.16
GPC1-209ENST00000495100 GLRX3O76003 335 aaKnown RBP16.08■□□□□ 0.16
GPC1-209ENST00000495100 NRXN1Q9ULB1 1477 aa16.08■□□□□ 0.16
GPC1-209ENST00000495100 PLEKHG3A1L390 1219 aa16.07■□□□□ 0.16
GPC1-209ENST00000495100 ATP2B1P20020 1258 aa16.07■□□□□ 0.16
GPC1-209ENST00000495100 LIMCH1Q9UPQ0 1083 aa16.07■□□□□ 0.16
GPC1-209ENST00000495100 MYO3AQ8NEV4 1616 aa16.07■□□□□ 0.16
GPC1-209ENST00000495100 MBD3O95983 291 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms