RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 MAP2P11137 1827 aaKnown RBP9.77□□□□□ -0.84
HDAC3-206ENST00000471968 POLRMTO00411 1230 aaKnown RBP9.77□□□□□ -0.85
HDAC3-206ENST00000471968 TRPA1O75762 1119 aa9.77□□□□□ -0.85
HDAC3-206ENST00000471968 COL9A1P20849 921 aa9.77□□□□□ -0.85
HDAC3-206ENST00000471968 NOGQ13253 232 aa9.77□□□□□ -0.85
HDAC3-206ENST00000471968 PKN2Q16513 984 aaKnown RBP9.77□□□□□ -0.85
HDAC3-206ENST00000471968 C2CD5Q86YS7 1000 aa9.77□□□□□ -0.85
HDAC3-206ENST00000471968 SRP68Q9UHB9 627 aaKnown RBP9.77□□□□□ -0.85
HDAC3-206ENST00000471968 TTC21AQ8NDW8 1320 aa9.77□□□□□ -0.85
HDAC3-206ENST00000471968 ZNF541Q9H0D2 1346 aa9.77□□□□□ -0.85
HDAC3-206ENST00000471968 LAMA3Q16787 3333 aa9.77□□□□□ -0.85
HDAC3-206ENST00000471968 CHRDL2Q6WN34 429 aa9.76□□□□□ -0.85
HDAC3-206ENST00000471968 OTUD5Q96G74 571 aa9.76□□□□□ -0.85
HDAC3-206ENST00000471968 LTN1O94822 1766 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 POTEFA5A3E0 1075 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 CELF2O95319 508 aaKnown RBP9.75□□□□□ -0.85
HDAC3-206ENST00000471968 BICDL1Q6ZP65 573 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 HHIPL1Q96JK4 782 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 RNF186Q9NXI6 227 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 ASAP1Q9ULH1 1129 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 LTBP3Q9NS15 1303 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 USP31Q70CQ4 1352 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 CACNA1AO00555 2505 aa9.75□□□□□ -0.85
HDAC3-206ENST00000471968 CENPFP49454 3210 aa9.74□□□□□ -0.85
HDAC3-206ENST00000471968 H0YIN7 160 aa9.74□□□□□ -0.85
HDAC3-206ENST00000471968 RPS6KA4O75676 772 aa9.74□□□□□ -0.85
HDAC3-206ENST00000471968 SYNE4Q8N205 404 aa9.74□□□□□ -0.85
HDAC3-206ENST00000471968 KDM2AQ9Y2K7 1162 aa9.74□□□□□ -0.85
HDAC3-206ENST00000471968 PCDH11XQ9BZA7 1347 aa9.74□□□□□ -0.85
HDAC3-206ENST00000471968 PCDH11YQ9BZA8 1340 aa9.74□□□□□ -0.85
HDAC3-206ENST00000471968 FAM208AQ9UK61 1670 aaKnown RBP9.74□□□□□ -0.85
HDAC3-206ENST00000471968 ZNF622Q969S3 477 aaKnown RBP eCLIP9.73□□□□□ -0.85
HDAC3-206ENST00000471968 RBM27Q9P2N5 1060 aaKnown RBP9.73□□□□□ -0.85
HDAC3-206ENST00000471968 RAPGEFL1Q9UHV5 662 aa9.73□□□□□ -0.85
HDAC3-206ENST00000471968 HDAC9Q9UKV0 1011 aa9.73□□□□□ -0.85
HDAC3-206ENST00000471968 SMG6Q86US8 1419 aaKnown RBP9.73□□□□□ -0.85
HDAC3-206ENST00000471968 H0YGN5 161 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 TM4SF1P30408 202 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 PLA2G5P39877 138 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.72□□□□□ -0.85
HDAC3-206ENST00000471968 RAPGEF4Q8WZA2 1011 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 IP6K1Q92551 441 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 ZNF692Q9BU19 519 aaPredicted RBP9.72□□□□□ -0.85
HDAC3-206ENST00000471968 ZNF408Q9H9D4 720 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 CGNL1Q0VF96 1302 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 USP42Q9H9J4 1324 aaKnown RBP9.72□□□□□ -0.85
HDAC3-206ENST00000471968 DLEC1Q9Y238 1755 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 FER1L6Q2WGJ9 1857 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 TRPM7Q96QT4 1865 aa9.72□□□□□ -0.85
HDAC3-206ENST00000471968 ITGB4P16144 1822 aa9.71□□□□□ -0.85
HDAC3-206ENST00000471968 HTTP42858 3142 aa9.71□□□□□ -0.85
HDAC3-206ENST00000471968 CYP27B1O15528 508 aa9.71□□□□□ -0.86
HDAC3-206ENST00000471968 RC3H1Q5TC82 1133 aaKnown RBP9.71□□□□□ -0.86
HDAC3-206ENST00000471968 CCDC24Q8N4L8 307 aa9.71□□□□□ -0.86
HDAC3-206ENST00000471968 USHBP1Q8N6Y0 703 aa9.71□□□□□ -0.86
HDAC3-206ENST00000471968 INSRP06213 1382 aa9.71□□□□□ -0.86
HDAC3-206ENST00000471968 CD163L1Q9NR16 1453 aa9.71□□□□□ -0.86
HDAC3-206ENST00000471968 TATP17735 454 aaPredicted RBP9.7□□□□□ -0.86
HDAC3-206ENST00000471968 KIF23Q02241 960 aaPredicted RBP9.7□□□□□ -0.86
HDAC3-206ENST00000471968 FBXO46Q6PJ61 603 aaPredicted RBP9.7□□□□□ -0.86
HDAC3-206ENST00000471968 FAM122AQ96E09 287 aa9.7□□□□□ -0.86
HDAC3-206ENST00000471968 TMOD3Q9NYL9 352 aa9.7□□□□□ -0.86
HDAC3-206ENST00000471968 CNTNAP4Q9C0A0 1308 aa9.7□□□□□ -0.86
HDAC3-206ENST00000471968 NME9Q86XW9 330 aa9.69□□□□□ -0.86
HDAC3-206ENST00000471968 SLC4A9Q96Q91 983 aa9.69□□□□□ -0.86
HDAC3-206ENST00000471968 KTN1Q86UP2 1357 aaKnown RBP9.68□□□□□ -0.86
HDAC3-206ENST00000471968 CARMIL3Q8ND23 1372 aa9.68□□□□□ -0.86
HDAC3-206ENST00000471968 LMOD1P29536 600 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-206ENST00000471968 HUNKP57058 714 aa9.68□□□□□ -0.86
HDAC3-206ENST00000471968 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.68□□□□□ -0.86
HDAC3-206ENST00000471968 GPC2Q8N158 579 aa9.68□□□□□ -0.86
HDAC3-206ENST00000471968 RBM42Q9BTD8 480 aaKnown RBP9.68□□□□□ -0.86
HDAC3-206ENST00000471968 ATG3Q9NT62 314 aa9.68□□□□□ -0.86
HDAC3-206ENST00000471968 SCN11AQ9UI33 1791 aa9.68□□□□□ -0.86
HDAC3-206ENST00000471968 KDRP35968 1356 aa9.67□□□□□ -0.86
HDAC3-206ENST00000471968 MUC3AQ02505 3323 aa9.67□□□□□ -0.86
HDAC3-206ENST00000471968 FAM155AB1AL88 458 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-206ENST00000471968 EN2P19622 333 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-206ENST00000471968 HOXD11P31277 338 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-206ENST00000471968 NBPF6Q5VWK0 638 aa9.67□□□□□ -0.86
HDAC3-206ENST00000471968 DCAF11Q8TEB1 546 aa9.67□□□□□ -0.86
HDAC3-206ENST00000471968 ZNF296Q8WUU4 475 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-206ENST00000471968 SNX27Q96L92 541 aa9.67□□□□□ -0.86
HDAC3-206ENST00000471968 NBPF4Q96M43 638 aa9.67□□□□□ -0.86
HDAC3-206ENST00000471968 RGPD2P0DJD1 1756 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 MAP3K19Q56UN5 1328 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 SERPINB2P05120 415 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 EPS15P42566 896 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 NFIXQ14938 502 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 USPL1Q5W0Q7 1092 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 LRCH3Q96II8 777 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 MPHOSPH9Q99550 1183 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 GLIS2Q9BZE0 524 aaPredicted RBP9.66□□□□□ -0.86
HDAC3-206ENST00000471968 ZNF277Q9NRM2 450 aaPredicted RBP9.66□□□□□ -0.86
HDAC3-206ENST00000471968 GJA3Q9Y6H8 435 aa9.66□□□□□ -0.86
HDAC3-206ENST00000471968 SOX1O00570 391 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-206ENST00000471968 ZPR1O75312 459 aa9.65□□□□□ -0.86
HDAC3-206ENST00000471968 INTS3Q68E01 1043 aaKnown RBP9.65□□□□□ -0.86
HDAC3-206ENST00000471968 USP50Q70EL3 339 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-206ENST00000471968 CENPJQ9HC77 1338 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms