RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 HSP90AB2PQ58FF8 381 aa11.98□□□□□ -0.49
HDAC3-205ENST00000469550 TFCP2L1Q9NZI6 479 aa11.98□□□□□ -0.49
HDAC3-205ENST00000469550 MAP2P11137 1827 aaKnown RBP11.97□□□□□ -0.49
HDAC3-205ENST00000469550 PTMSP20962 102 aa11.97□□□□□ -0.49
HDAC3-205ENST00000469550 ZKSCAN2Q63HK3 967 aa11.97□□□□□ -0.49
HDAC3-205ENST00000469550 USHBP1Q8N6Y0 703 aa11.97□□□□□ -0.49
HDAC3-205ENST00000469550 SNX21Q969T3 373 aa11.97□□□□□ -0.49
HDAC3-205ENST00000469550 PANK2Q9BZ23 570 aa11.97□□□□□ -0.49
HDAC3-205ENST00000469550 CIZ1Q9ULV3 898 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-205ENST00000469550 ZNF784Q8NCA9 323 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-205ENST00000469550 NAP1L5Q96NT1 182 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-205ENST00000469550 GRPEL1Q9HAV7 217 aa11.96□□□□□ -0.49
HDAC3-205ENST00000469550 C4BP0C0L5 1744 aa11.96□□□□□ -0.5
HDAC3-205ENST00000469550 HSP90AA1P07900 732 aaKnown RBP11.96□□□□□ -0.5
HDAC3-205ENST00000469550 RBM25P49756 843 aaKnown RBP11.96□□□□□ -0.5
HDAC3-205ENST00000469550 MORC1Q86VD1 984 aa11.96□□□□□ -0.5
HDAC3-205ENST00000469550 HSCBQ8IWL3 235 aa11.96□□□□□ -0.5
HDAC3-205ENST00000469550 DZIP1LQ8IYY4 767 aaKnown RBP11.96□□□□□ -0.5
HDAC3-205ENST00000469550 CYP27B1O15528 508 aa11.95□□□□□ -0.5
HDAC3-205ENST00000469550 KCNQ4P56696 695 aa11.95□□□□□ -0.5
HDAC3-205ENST00000469550 NKX1-1Q15270 411 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-205ENST00000469550 UBR3Q6ZT12 1888 aa11.95□□□□□ -0.5
HDAC3-205ENST00000469550 ESPNB1AK53 854 aa11.94□□□□□ -0.5
HDAC3-205ENST00000469550 SKOR2Q2VWA4 1001 aaPredicted RBP11.94□□□□□ -0.5
HDAC3-205ENST00000469550 SMC5Q8IY18 1101 aa11.94□□□□□ -0.5
HDAC3-205ENST00000469550 TNNQ9UQP3 1299 aa11.94□□□□□ -0.5
HDAC3-205ENST00000469550 PALLDQ8WX93 1383 aa11.94□□□□□ -0.5
HDAC3-205ENST00000469550 COL23A1Q86Y22 540 aaPredicted RBP11.94□□□□□ -0.5
HDAC3-205ENST00000469550 CFAP53Q96M91 514 aa11.94□□□□□ -0.5
HDAC3-205ENST00000469550 GZF1Q9H116 711 aaPredicted RBP11.94□□□□□ -0.5
HDAC3-205ENST00000469550 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.94□□□□□ -0.5
HDAC3-205ENST00000469550 EMILIN1Q9Y6C2 1016 aa11.94□□□□□ -0.5
HDAC3-205ENST00000469550 HSP90AA2PQ14568 343 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-205ENST00000469550 FLAD1Q8NFF5 587 aa11.93□□□□□ -0.5
HDAC3-205ENST00000469550 SMARCC1Q92922 1105 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-205ENST00000469550 DDX19BQ9UMR2 479 aa11.93□□□□□ -0.5
HDAC3-205ENST00000469550 ZNF831Q5JPB2 1677 aa11.93□□□□□ -0.5
HDAC3-205ENST00000469550 MFAP1P55081 439 aaKnown RBP11.92□□□□□ -0.5
HDAC3-205ENST00000469550 NEUROD2Q15784 382 aa11.92□□□□□ -0.5
HDAC3-205ENST00000469550 FTSJ3Q8IY81 847 aaKnown RBP11.92□□□□□ -0.5
HDAC3-205ENST00000469550 GBP4Q96PP9 640 aa11.92□□□□□ -0.5
HDAC3-205ENST00000469550 RRP7AQ9Y3A4 280 aaKnown RBP11.92□□□□□ -0.5
HDAC3-205ENST00000469550 GPR162Q16538 588 aa11.91□□□□□ -0.5
HDAC3-205ENST00000469550 SPRYD3Q8NCJ5 442 aa11.91□□□□□ -0.5
HDAC3-205ENST00000469550 SPG7Q9UQ90 795 aa11.91□□□□□ -0.5
HDAC3-205ENST00000469550 NLGN2Q8NFZ4 835 aa11.9□□□□□ -0.5
HDAC3-205ENST00000469550 BCL2L13Q9BXK5 485 aa11.9□□□□□ -0.5
HDAC3-205ENST00000469550 TPM2P07951 284 aa11.9□□□□□ -0.5
HDAC3-205ENST00000469550 RAB3GAP1Q15042 981 aa11.9□□□□□ -0.5
HDAC3-205ENST00000469550 MPRIPQ6WCQ1 1025 aa11.9□□□□□ -0.5
HDAC3-205ENST00000469550 MTHFSP49914 203 aa11.89□□□□□ -0.51
HDAC3-205ENST00000469550 EYA1Q99502 592 aa11.89□□□□□ -0.51
HDAC3-205ENST00000469550 POLKQ9UBT6 870 aa11.89□□□□□ -0.51
HDAC3-205ENST00000469550 CD2APQ9Y5K6 639 aa11.89□□□□□ -0.51
HDAC3-205ENST00000469550 IL16Q14005 1332 aa11.89□□□□□ -0.51
HDAC3-205ENST00000469550 ATF7IPQ6VMQ6 1270 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 PIGBQ92521 554 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 TNPO1Q92973 898 aaKnown RBP11.88□□□□□ -0.51
HDAC3-205ENST00000469550 TRIM44Q96DX7 344 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-205ENST00000469550 GRIN3BO60391 1043 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 TRIM27P14373 513 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 NUCB1Q02818 461 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 CLEC17AQ6ZS10 378 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 KLHL34Q8N239 644 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 KIF16BQ96L93 1317 aa11.88□□□□□ -0.51
HDAC3-205ENST00000469550 IBTKQ9P2D0 1353 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-205ENST00000469550 PKNOX2Q96KN3 472 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 PPP1R9BQ96SB3 815 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 ZBTB40Q9NUA8 1239 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 COL5A3P25940 1745 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-205ENST00000469550 PHKG2P15735 406 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 SSFA2P28290 1259 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 IFNL2Q8IZJ0 200 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 AK7Q96M32 723 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 SMC4Q9NTJ3 1288 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 ERBB4Q15303 1308 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 IGSF1Q8N6C5 1336 aa11.87□□□□□ -0.51
HDAC3-205ENST00000469550 KDRP35968 1356 aa11.86□□□□□ -0.51
HDAC3-205ENST00000469550 CICQ96RK0 1608 aaPredicted RBP11.86□□□□□ -0.51
HDAC3-205ENST00000469550 KIF13BQ9NQT8 1826 aa11.86□□□□□ -0.51
HDAC3-205ENST00000469550 LOC102724428A0A0B4J2F2 783 aa11.86□□□□□ -0.51
HDAC3-205ENST00000469550 IPO8O15397 1037 aaKnown RBP11.86□□□□□ -0.51
HDAC3-205ENST00000469550 YBX3P16989 372 aaKnown RBP eCLIP11.86□□□□□ -0.513e-8■■□□□ 12.1
HDAC3-205ENST00000469550 SIK1P57059 783 aa11.86□□□□□ -0.51
HDAC3-205ENST00000469550 CCDC173Q0VFZ6 552 aa11.86□□□□□ -0.51
HDAC3-205ENST00000469550 EIF4A2Q14240 407 aaKnown RBP11.86□□□□□ -0.51
HDAC3-205ENST00000469550 BMP2KLQ5H9B9 411 aa11.86□□□□□ -0.51
HDAC3-205ENST00000469550 TERF1P54274 439 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 C1QTNF8P60827 252 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 MSL1Q68DK7 614 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 GAS2L3Q86XJ1 694 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 SSH1Q8WYL5 1049 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 TMOD3Q9NYL9 352 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 U2AF1L5P0DN76 240 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-205ENST00000469550 U2AF1Q01081 240 aaKnown RBP eCLIP11.85□□□□□ -0.51
HDAC3-205ENST00000469550 EXOSC9Q06265 439 aaKnown RBP11.85□□□□□ -0.51
HDAC3-205ENST00000469550 AMIGO3Q86WK7 504 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 ITPRIPQ8IWB1 547 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 LINC00116Q8NCU8 138 aa11.85□□□□□ -0.51
HDAC3-205ENST00000469550 HSP90AB1P08238 724 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms