RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SLC39A6Q13433 755 aa18.2■□□□□ 0.5
SKA1-202ENST00000398452 VIRMAQ69YN4 1812 aaKnown RBP18.19■□□□□ 0.5
SKA1-202ENST00000398452 CCDC30Q5VVM6 783 aa18.19■□□□□ 0.5
SKA1-202ENST00000398452 SPDYE1Q8NFV5 336 aaPredicted RBP18.19■□□□□ 0.5
SKA1-202ENST00000398452 KAT6BQ8WYB5 2073 aa18.19■□□□□ 0.5
SKA1-202ENST00000398452 KCNQ3O43525 872 aa18.18■□□□□ 0.5
SKA1-202ENST00000398452 HDGFL1Q5TGJ6 251 aa18.18■□□□□ 0.5
SKA1-202ENST00000398452 TSPYL6Q8N831 410 aa18.18■□□□□ 0.5
SKA1-202ENST00000398452 PIGBQ92521 554 aa18.18■□□□□ 0.5
SKA1-202ENST00000398452 KIF16BQ96L93 1317 aa18.18■□□□□ 0.5
SKA1-202ENST00000398452 IPO8O15397 1037 aaKnown RBP18.17■□□□□ 0.5
SKA1-202ENST00000398452 SNRPA1P09661 255 aaKnown RBP18.17■□□□□ 0.5
SKA1-202ENST00000398452 RRP1P56182 461 aaKnown RBP18.17■□□□□ 0.5
SKA1-202ENST00000398452 KRT24Q2M2I5 525 aa18.17■□□□□ 0.5
SKA1-202ENST00000398452 FRAT1Q92837 279 aaPredicted RBP18.17■□□□□ 0.5
SKA1-202ENST00000398452 SMARCC1Q92922 1105 aaPredicted RBP18.17■□□□□ 0.5
SKA1-202ENST00000398452 BCL2L13Q9BXK5 485 aa18.17■□□□□ 0.5
SKA1-202ENST00000398452 LRP5O75197 1615 aa18.16■□□□□ 0.5
SKA1-202ENST00000398452 MS4A1P11836 297 aa18.16■□□□□ 0.5
SKA1-202ENST00000398452 EIF2S2P20042 333 aaKnown RBP18.16■□□□□ 0.5
SKA1-202ENST00000398452 BCL11BQ9C0K0 894 aaPredicted RBP18.16■□□□□ 0.5
SKA1-202ENST00000398452 BCL9O00512 1426 aa18.15■□□□□ 0.5
SKA1-202ENST00000398452 KDM3BQ7LBC6 1761 aa18.15■□□□□ 0.5
SKA1-202ENST00000398452 SBF2Q86WG5 1849 aa18.15■□□□□ 0.5
SKA1-202ENST00000398452 PTCD1O75127 700 aaKnown RBP18.15■□□□□ 0.5
SKA1-202ENST00000398452 BCAR3O75815 825 aa18.15■□□□□ 0.5
SKA1-202ENST00000398452 SSH1Q8WYL5 1049 aa18.15■□□□□ 0.5
SKA1-202ENST00000398452 ZNF496Q96IT1 587 aaPredicted RBP18.15■□□□□ 0.5
SKA1-202ENST00000398452 NUP188Q5SRE5 1749 aa18.15■□□□□ 0.5
SKA1-202ENST00000398452 SIPA1L3O60292 1781 aaPredicted RBP18.14■□□□□ 0.5
SKA1-202ENST00000398452 KCNQ2O43526 872 aa18.14■□□□□ 0.49
SKA1-202ENST00000398452 GIGYF1O75420 1035 aaPredicted RBP18.14■□□□□ 0.49
SKA1-202ENST00000398452 TEX13AQ9BXU3 409 aaPredicted RBP18.14■□□□□ 0.49
SKA1-202ENST00000398452 RREB1Q92766 1687 aa18.14■□□□□ 0.49
SKA1-202ENST00000398452 DOT1LQ8TEK3 1739 aa18.13■□□□□ 0.49
SKA1-202ENST00000398452 ZKSCAN2Q63HK3 967 aa18.13■□□□□ 0.49
SKA1-202ENST00000398452 NECTIN2Q92692 538 aa18.13■□□□□ 0.49
SKA1-202ENST00000398452 ATG3Q9NT62 314 aa18.13■□□□□ 0.49
SKA1-202ENST00000398452 HEG1Q9ULI3 1381 aa18.13■□□□□ 0.49
SKA1-202ENST00000398452 TCERG1O14776 1098 aaKnown RBP18.12■□□□□ 0.49
SKA1-202ENST00000398452 PLSCR1O15162 318 aa18.12■□□□□ 0.49
SKA1-202ENST00000398452 VSIG10Q8N0Z9 540 aa18.12■□□□□ 0.49
SKA1-202ENST00000398452 ASAP1Q9ULH1 1129 aa18.12■□□□□ 0.49
SKA1-202ENST00000398452 TOGARAM1Q9Y4F4 1720 aa18.12■□□□□ 0.49
SKA1-202ENST00000398452 FTSJ3Q8IY81 847 aaKnown RBP18.11■□□□□ 0.49
SKA1-202ENST00000398452 SP7Q8TDD2 431 aaPredicted RBP18.11■□□□□ 0.49
SKA1-202ENST00000398452 ANO8Q9HCE9 1232 aaPredicted RBP18.11■□□□□ 0.49
SKA1-202ENST00000398452 DBF4Q9UBU7 674 aaPredicted RBP18.11■□□□□ 0.49
SKA1-202ENST00000398452 PROM2Q8N271 834 aa18.1■□□□□ 0.49
SKA1-202ENST00000398452 MRPL50Q8N5N7 158 aaKnown RBP18.1■□□□□ 0.49
SKA1-202ENST00000398452 PPP1R1BQ9UD71 204 aaPredicted RBP18.1■□□□□ 0.49
SKA1-202ENST00000398452 RNF123Q5XPI4 1314 aa18.09■□□□□ 0.49
SKA1-202ENST00000398452 STARD3NLO95772 234 aa18.09■□□□□ 0.49
SKA1-202ENST00000398452 BRPF1P55201 1214 aaPredicted RBP18.09■□□□□ 0.49
SKA1-202ENST00000398452 TXNRD1Q16881 649 aa18.09■□□□□ 0.49
SKA1-202ENST00000398452 NPM2Q86SE8 214 aaKnown RBP18.09■□□□□ 0.49
SKA1-202ENST00000398452 API5Q9BZZ5 524 aaKnown RBP18.09■□□□□ 0.49
SKA1-202ENST00000398452 NOB1Q9ULX3 412 aaKnown RBP18.09■□□□□ 0.49
SKA1-202ENST00000398452 CLEC11AQ9Y240 323 aa18.09■□□□□ 0.49
SKA1-202ENST00000398452 ITGB4P16144 1822 aa18.09■□□□□ 0.49
SKA1-202ENST00000398452 PALLDQ8WX93 1383 aa18.08■□□□□ 0.49
SKA1-202ENST00000398452 PLIN1O60240 522 aa18.08■□□□□ 0.48
SKA1-202ENST00000398452 PDGFDQ9GZP0 370 aaPredicted RBP18.08■□□□□ 0.48
SKA1-202ENST00000398452 SPON1Q9HCB6 807 aa18.08■□□□□ 0.48
SKA1-202ENST00000398452 PTPRCP08575 1304 aa18.07■□□□□ 0.48
SKA1-202ENST00000398452 ERBB4Q15303 1308 aa18.07■□□□□ 0.48
SKA1-202ENST00000398452 HMGB2P26583 209 aaKnown RBP18.07■□□□□ 0.48
SKA1-202ENST00000398452 FKBP8Q14318 412 aa18.07■□□□□ 0.48
SKA1-202ENST00000398452 ARHGAP45Q92619 1136 aa18.07■□□□□ 0.48
SKA1-202ENST00000398452 HYPKQ9NX55 129 aa18.07■□□□□ 0.48
SKA1-202ENST00000398452 HAX1O00165 279 aa18.06■□□□□ 0.48
SKA1-202ENST00000398452 ATP6V1AP38606 617 aa18.06■□□□□ 0.48
SKA1-202ENST00000398452 IRX6P78412 446 aaPredicted RBP18.06■□□□□ 0.48
SKA1-202ENST00000398452 PDE3AQ14432 1141 aa18.06■□□□□ 0.48
SKA1-202ENST00000398452 ATF7IPQ6VMQ6 1270 aa18.06■□□□□ 0.48
SKA1-202ENST00000398452 CHPF2Q9P2E5 772 aa18.06■□□□□ 0.48
SKA1-202ENST00000398452 PAPPAQ13219 1627 aa18.05■□□□□ 0.48
SKA1-202ENST00000398452 LOC102724428A0A0B4J2F2 783 aa18.05■□□□□ 0.48
SKA1-202ENST00000398452 ZBTB7AO95365 584 aa18.05■□□□□ 0.48
SKA1-202ENST00000398452 DDX58O95786 925 aaKnown RBP18.05■□□□□ 0.48
SKA1-202ENST00000398452 SIK1P57059 783 aa18.05■□□□□ 0.48
SKA1-202ENST00000398452 DZIP1LQ8IYY4 767 aaKnown RBP18.05■□□□□ 0.48
SKA1-202ENST00000398452 DDX21Q9NR30 783 aaKnown RBP eCLIP18.05■□□□□ 0.48
SKA1-202ENST00000398452 STK32BQ9NY57 414 aa18.05■□□□□ 0.48
SKA1-202ENST00000398452 USP16Q9Y5T5 823 aa18.05■□□□□ 0.48
SKA1-202ENST00000398452 KCPQ6ZWJ8 1503 aa18.04■□□□□ 0.48
SKA1-202ENST00000398452 PRAMEF22A3QJZ6 481 aa18.04■□□□□ 0.48
SKA1-202ENST00000398452 FKBP5Q13451 457 aaPredicted RBP18.04■□□□□ 0.48
SKA1-202ENST00000398452 DNAJC10Q8IXB1 793 aa18.04■□□□□ 0.48
SKA1-202ENST00000398452 NHSQ6T4R5 1651 aa18.03■□□□□ 0.48
SKA1-202ENST00000398452 MYL6BP14649 208 aa18.03■□□□□ 0.48
SKA1-202ENST00000398452 FLIIQ13045 1269 aa18.03■□□□□ 0.48
SKA1-202ENST00000398452 CLUAP1Q96AJ1 413 aa18.03■□□□□ 0.48
SKA1-202ENST00000398452 CHMP4BQ9H444 224 aaKnown RBP18.03■□□□□ 0.48
SKA1-202ENST00000398452 GTF3C3Q9Y5Q9 886 aa18.03■□□□□ 0.48
SKA1-202ENST00000398452 ERICH6BQ5W0A0 696 aa18.02■□□□□ 0.48
SKA1-202ENST00000398452 UBR2Q8IWV8 1755 aa18.02■□□□□ 0.47
SKA1-202ENST00000398452 TRIM27P14373 513 aa18.01■□□□□ 0.47
SKA1-202ENST00000398452 SLC15A2Q16348 729 aa18.01■□□□□ 0.47
SKA1-202ENST00000398452 CCNL1Q9UK58 526 aaPredicted RBP18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms