RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 SLC12A7Q9Y666 1083 aa17.22■□□□□ 0.35
LMX1B-201ENST00000355497 HLTFQ14527 1009 aaKnown RBP eCLIP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 TRMT1Q9NXH9 659 aaKnown RBP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 NUTM2BA6NNL0 878 aaPredicted RBP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 NUTM2EB1AL46 878 aaPredicted RBP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 STARD3NLO95772 234 aa17.21■□□□□ 0.35
LMX1B-201ENST00000355497 IFIT1P09914 478 aaKnown RBP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 XPCQ01831 940 aaPredicted RBP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 RRS1Q15050 365 aaKnown RBP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 NUTM2AQ8IVF1 878 aaPredicted RBP17.21■□□□□ 0.35
LMX1B-201ENST00000355497 EHMT1Q9H9B1 1298 aa17.21■□□□□ 0.35
LMX1B-201ENST00000355497 SMARCA5O60264 1052 aaPredicted RBP17.2■□□□□ 0.34
LMX1B-201ENST00000355497 SPECC1LQ69YQ0 1117 aa17.2■□□□□ 0.34
LMX1B-201ENST00000355497 FERMT2Q96AC1 680 aa17.2■□□□□ 0.34
LMX1B-201ENST00000355497 PRKCSHP14314 528 aaPredicted RBP17.2■□□□□ 0.34
LMX1B-201ENST00000355497 GUCY1B3Q02153 619 aa17.2■□□□□ 0.34
LMX1B-201ENST00000355497 SPATA24Q86W54 205 aa17.2■□□□□ 0.34
LMX1B-201ENST00000355497 DDX19AQ9NUU7 478 aaKnown RBP17.2■□□□□ 0.34
LMX1B-201ENST00000355497 MTIF2P46199 727 aaKnown RBP17.2■□□□□ 0.34
LMX1B-201ENST00000355497 STX1AQ16623 288 aa17.2■□□□□ 0.34
LMX1B-201ENST00000355497 TMC6Q7Z403 805 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 CCDC194A0A1B0GVG4 234 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 GOLGA6L9A6NEM1 432 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 TMCO5BA8MYB1 307 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 CCDC96Q2M329 555 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 C16orf45Q96MC5 204 aaPredicted RBP17.19■□□□□ 0.34
LMX1B-201ENST00000355497 BOLA2Q9H3K6 86 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 PPM1FP49593 454 aaPredicted RBP17.19■□□□□ 0.34
LMX1B-201ENST00000355497 SLFN5Q08AF3 891 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 CETN1Q12798 172 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 CKAP2LQ8IYA6 745 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 GOLGA8AA7E2F4 631 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 GOLGA8BA8MQT2 603 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 GTF2F1P35269 517 aaKnown RBP eCLIP17.19■□□□□ 0.34
LMX1B-201ENST00000355497 NLRP5P59047 1200 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 MAATS1Q7Z4T9 603 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 FSIP1Q8NA03 581 aa17.19■□□□□ 0.34
LMX1B-201ENST00000355497 USP25Q9UHP3 1055 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 CASKIN1Q8WXD9 1431 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 A0A087WZG4 1122 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 ATAD2Q6PL18 1390 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 BAG4O95429 457 aaKnown RBP17.18■□□□□ 0.34
LMX1B-201ENST00000355497 MAP3K12Q12852 859 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 IQCA1Q86XH1 822 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 FAM114A1Q8IWE2 563 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 ZNF652Q9Y2D9 606 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 COMMD10Q9Y6G5 202 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 FSD2A1L4K1 749 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 C6orf163Q5TEZ5 329 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 ZNF444Q8N0Y2 327 aaPredicted RBP17.18■□□□□ 0.34
LMX1B-201ENST00000355497 HOMER2Q9NSB8 354 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 LIMCH1Q9UPQ0 1083 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 KIAA1107Q9UPP5 1409 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 ZNF213O14771 459 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 RANBP6O60518 1105 aaKnown RBP17.18■□□□□ 0.34
LMX1B-201ENST00000355497 DUSP27Q5VZP5 1158 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 DZIP1Q86YF9 867 aaKnown RBP17.18■□□□□ 0.34
LMX1B-201ENST00000355497 GPATCH11Q8N954 259 aa17.18■□□□□ 0.34
LMX1B-201ENST00000355497 RNF41Q9H4P4 317 aaPredicted RBP17.17■□□□□ 0.34
LMX1B-201ENST00000355497 KIF21BO75037 1637 aa17.17■□□□□ 0.34
LMX1B-201ENST00000355497 TMPOP42166 694 aaKnown RBP17.17■□□□□ 0.34
LMX1B-201ENST00000355497 AMPD3Q01432 767 aa17.17■□□□□ 0.34
LMX1B-201ENST00000355497 THEMISQ8N1K5 641 aaPredicted RBP17.17■□□□□ 0.34
LMX1B-201ENST00000355497 CCDC40Q4G0X9 1142 aa17.17■□□□□ 0.34
LMX1B-201ENST00000355497 FEZ1Q99689 392 aa17.17■□□□□ 0.34
LMX1B-201ENST00000355497 FERP16591 822 aa17.17■□□□□ 0.34
LMX1B-201ENST00000355497 CHMP4BP1P59074 171 aa17.17■□□□□ 0.34
LMX1B-201ENST00000355497 PRDM11Q9NQV5 511 aa17.17■□□□□ 0.34
LMX1B-201ENST00000355497 POLA1P09884 1462 aaPredicted RBP17.17■□□□□ 0.34
LMX1B-201ENST00000355497 SSFA2P28290 1259 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 SNW1Q13573 536 aaKnown RBP17.16■□□□□ 0.34
LMX1B-201ENST00000355497 GRIPAP1Q4V328 841 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 FGD5Q6ZNL6 1462 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 CALML4Q96GE6 196 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 CEP112Q8N8E3 955 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 MYD88Q99836 296 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 AFAP1Q8N556 730 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 DDX23Q9BUQ8 820 aaKnown RBP17.16■□□□□ 0.34
LMX1B-201ENST00000355497 ATAD2BQ9ULI0 1458 aa17.16■□□□□ 0.34
LMX1B-201ENST00000355497 PRPF4BQ13523 1007 aaKnown RBP17.16■□□□□ 0.34
LMX1B-201ENST00000355497 TSNARE1Q96NA8 513 aa17.15■□□□□ 0.34
LMX1B-201ENST00000355497 SLC5A1P13866 664 aa17.15■□□□□ 0.34
LMX1B-201ENST00000355497 CATIPQ7Z7H3 387 aa17.15■□□□□ 0.34
LMX1B-201ENST00000355497 TRERF1Q96PN7 1200 aa17.15■□□□□ 0.34
LMX1B-201ENST00000355497 ALDH1L2Q3SY69 923 aa17.15■□□□□ 0.34
LMX1B-201ENST00000355497 PPP4R3BQ5MIZ7 849 aa17.15■□□□□ 0.34
LMX1B-201ENST00000355497 PYM1Q9BRP8 204 aaKnown RBP17.15■□□□□ 0.34
LMX1B-201ENST00000355497 IGF1RP08069 1367 aa17.15■□□□□ 0.34
LMX1B-201ENST00000355497 IFIT3O14879 490 aaKnown RBP17.15■□□□□ 0.34
LMX1B-201ENST00000355497 HMGB2P26583 209 aaKnown RBP17.14■□□□□ 0.33
LMX1B-201ENST00000355497 CCDC82Q8N4S0 544 aa17.14■□□□□ 0.33
LMX1B-201ENST00000355497 BBXQ8WY36 941 aaPredicted RBP17.14■□□□□ 0.33
LMX1B-201ENST00000355497 TNPO1Q92973 898 aaKnown RBP17.14■□□□□ 0.33
LMX1B-201ENST00000355497 MIS18AQ9NYP9 233 aa17.14■□□□□ 0.33
LMX1B-201ENST00000355497 LIG1P18858 919 aa17.14■□□□□ 0.33
LMX1B-201ENST00000355497 ADCY5O95622 1261 aa17.14■□□□□ 0.33
LMX1B-201ENST00000355497 LMAN1P49257 510 aa17.14■□□□□ 0.33
LMX1B-201ENST00000355497 HSF2BPO75031 334 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 MCM5P33992 734 aa17.13■□□□□ 0.33
LMX1B-201ENST00000355497 NOP2P46087 812 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms