RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 USP16Q9Y5T5 823 aa27.1■■□□□ 1.93
SMARCB1-202ENST00000344921 QSER1Q2KHR3 1735 aa27.09■■□□□ 1.93
SMARCB1-202ENST00000344921 UBR3Q6ZT12 1888 aa27.09■■□□□ 1.93
SMARCB1-202ENST00000344921 SSFA2P28290 1259 aa27.09■■□□□ 1.93
SMARCB1-202ENST00000344921 AMIGO3Q86WK7 504 aa27.09■■□□□ 1.93
SMARCB1-202ENST00000344921 COL23A1Q86Y22 540 aaPredicted RBP27.09■■□□□ 1.93
SMARCB1-202ENST00000344921 MYH14Q7Z406 1995 aaKnown RBP27.09■■□□□ 1.93
SMARCB1-202ENST00000344921 RPS6KA4O75676 772 aa27.08■■□□□ 1.93
SMARCB1-202ENST00000344921 INTS5Q6P9B9 1019 aaKnown RBP27.08■■□□□ 1.93
SMARCB1-202ENST00000344921 MBIPQ9NS73 344 aa27.08■■□□□ 1.93
SMARCB1-202ENST00000344921 GIGYF1O75420 1035 aaPredicted RBP27.07■■□□□ 1.92
SMARCB1-202ENST00000344921 TRAPPC3LQ5T215 181 aa27.07■■□□□ 1.92
SMARCB1-202ENST00000344921 ZBTB7AO95365 584 aa27.07■■□□□ 1.92
SMARCB1-202ENST00000344921 ZNF853P0CG23 659 aa27.07■■□□□ 1.92
SMARCB1-202ENST00000344921 CANXP27824 592 aaKnown RBP27.07■■□□□ 1.92
SMARCB1-202ENST00000344921 ZBTB1Q9Y2K1 713 aa27.07■■□□□ 1.92
SMARCB1-202ENST00000344921 WDR63Q8IWG1 891 aa27.05■■□□□ 1.92
SMARCB1-202ENST00000344921 CASZ1Q86V15 1759 aa27.05■■□□□ 1.92
SMARCB1-202ENST00000344921 A1BGP04217 495 aa27.04■■□□□ 1.92
SMARCB1-202ENST00000344921 NPM2Q86SE8 214 aaKnown RBP27.04■■□□□ 1.92
SMARCB1-202ENST00000344921 ZNF330Q9Y3S2 320 aaPredicted RBP27.04■■□□□ 1.92
SMARCB1-202ENST00000344921 ADRA2BP18089 450 aa27.03■■□□□ 1.92
SMARCB1-202ENST00000344921 SLC16A10Q8TF71 515 aa27.03■■□□□ 1.92
SMARCB1-202ENST00000344921 IL16Q14005 1332 aa27.03■■□□□ 1.92
SMARCB1-202ENST00000344921 RFC4P35249 363 aa27.02■■□□□ 1.92
SMARCB1-202ENST00000344921 ARHGEF1Q92888 912 aaKnown RBP27.02■■□□□ 1.92
SMARCB1-202ENST00000344921 ATF5Q9Y2D1 282 aaPredicted RBP27.02■■□□□ 1.92
SMARCB1-202ENST00000344921 KRT24Q2M2I5 525 aa27.02■■□□□ 1.92
SMARCB1-202ENST00000344921 TSR2Q969E8 191 aaKnown RBP27.02■■□□□ 1.92
SMARCB1-202ENST00000344921 MTFR1LQ9H019 292 aa27.02■■□□□ 1.92
SMARCB1-202ENST00000344921 EIF2S2P20042 333 aaKnown RBP27.01■■□□□ 1.91
SMARCB1-202ENST00000344921 PIP4K2AP48426 406 aaPredicted RBP27.01■■□□□ 1.91
SMARCB1-202ENST00000344921 SPON1Q9HCB6 807 aa27.01■■□□□ 1.91
SMARCB1-202ENST00000344921 SOS1Q07889 1333 aaPredicted RBP27■■□□□ 1.91
SMARCB1-202ENST00000344921 LAMB4A4D0S4 1761 aa26.99■■□□□ 1.91
SMARCB1-202ENST00000344921 ARXQ96QS3 562 aa26.99■■□□□ 1.91
SMARCB1-202ENST00000344921 COL15A1P39059 1388 aa26.98■■□□□ 1.91
SMARCB1-202ENST00000344921 ELL2O00472 640 aaPredicted RBP26.97■■□□□ 1.91
SMARCB1-202ENST00000344921 IL6STP40189 918 aaPredicted RBP26.97■■□□□ 1.91
SMARCB1-202ENST00000344921 MSL1Q68DK7 614 aa26.97■■□□□ 1.91
SMARCB1-202ENST00000344921 NECTIN2Q92692 538 aa26.97■■□□□ 1.91
SMARCB1-202ENST00000344921 DUSP27Q5VZP5 1158 aa26.96■■□□□ 1.91
SMARCB1-202ENST00000344921 ZPR1O75312 459 aa26.96■■□□□ 1.91
SMARCB1-202ENST00000344921 EIF5P55010 431 aaKnown RBP26.96■■□□□ 1.91
SMARCB1-202ENST00000344921 MYH16Q9H6N6 1097 aa26.95■■□□□ 1.9
SMARCB1-202ENST00000344921 ZNF521Q96K83 1311 aa26.94■■□□□ 1.9
SMARCB1-202ENST00000344921 A0A087WZG4 1122 aa26.94■■□□□ 1.9
SMARCB1-202ENST00000344921 HNRNPUQ00839 825 aaKnown RBP eCLIP26.94■■□□□ 1.9
SMARCB1-202ENST00000344921 FANCIQ9NVI1 1328 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 NBPF26B4DH59 902 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 HOXB7P09629 217 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 MYL6BP14649 208 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 GOLGA2Q08379 1002 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 NBPF10Q6P3W6 841 aaKnown RBP26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 NBPF15Q8N660 670 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 SPINK5Q9NQ38 1064 aaPredicted RBP26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 SRP68Q9UHB9 627 aaKnown RBP26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 SRCAPQ6ZRS2 3230 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 C4AP0C0L4 1744 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 HDGFL1Q5TGJ6 251 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 C8orf58Q8NAV2 365 aa26.93■■□□□ 1.9
SMARCB1-202ENST00000344921 POLD1P28340 1107 aa26.92■■□□□ 1.9
SMARCB1-202ENST00000344921 USP42Q9H9J4 1324 aaKnown RBP26.91■■□□□ 1.9
SMARCB1-202ENST00000344921 TBC1D2BQ9UPU7 963 aa26.91■■□□□ 1.9
SMARCB1-202ENST00000344921 PPP1R1BQ9UD71 204 aaPredicted RBP26.9■■□□□ 1.9
SMARCB1-202ENST00000344921 NARFQ9UHQ1 456 aa26.9■■□□□ 1.9
SMARCB1-202ENST00000344921 ERBB4Q15303 1308 aa26.9■■□□□ 1.9
SMARCB1-202ENST00000344921 USPL1Q5W0Q7 1092 aa26.9■■□□□ 1.9
SMARCB1-202ENST00000344921 GYS1P13807 737 aa26.89■■□□□ 1.9
SMARCB1-202ENST00000344921 DZIP3Q86Y13 1208 aaKnown RBP26.89■■□□□ 1.9
SMARCB1-202ENST00000344921 NLGN1Q8N2Q7 840 aa26.89■■□□□ 1.9
SMARCB1-202ENST00000344921 TSPYL6Q8N831 410 aa26.89■■□□□ 1.9
SMARCB1-202ENST00000344921 PTGER2P43116 358 aa26.88■■□□□ 1.89
SMARCB1-202ENST00000344921 E9PSI1 815 aa26.87■■□□□ 1.89
SMARCB1-202ENST00000344921 TWISTNBQ3B726 338 aaPredicted RBP26.87■■□□□ 1.89
SMARCB1-202ENST00000344921 ANXA1P04083 346 aa26.87■■□□□ 1.89
SMARCB1-202ENST00000344921 EXOSC9Q06265 439 aaKnown RBP26.87■■□□□ 1.89
SMARCB1-202ENST00000344921 LRP5O75197 1615 aa26.86■■□□□ 1.89
SMARCB1-202ENST00000344921 CHMP4AQ9BY43 222 aa26.86■■□□□ 1.89
SMARCB1-202ENST00000344921 CHPF2Q9P2E5 772 aa26.86■■□□□ 1.89
SMARCB1-202ENST00000344921 FKBP8Q14318 412 aa26.85■■□□□ 1.89
SMARCB1-202ENST00000344921 PDIA6Q15084 440 aa26.85■■□□□ 1.89
SMARCB1-202ENST00000344921 PROSER3Q2NL68 480 aa26.85■■□□□ 1.89
SMARCB1-202ENST00000344921 CDCA7LQ96GN5 454 aa26.85■■□□□ 1.89
SMARCB1-202ENST00000344921 SGIP1Q9BQI5 828 aa26.85■■□□□ 1.89
SMARCB1-202ENST00000344921 DDX21Q9NR30 783 aaKnown RBP eCLIP26.85■■□□□ 1.89
SMARCB1-202ENST00000344921 DBF4Q9UBU7 674 aaPredicted RBP26.85■■□□□ 1.89
SMARCB1-202ENST00000344921 SLFN5Q08AF3 891 aa26.83■■□□□ 1.89
SMARCB1-202ENST00000344921 CCDC30Q5VVM6 783 aa26.83■■□□□ 1.89
SMARCB1-202ENST00000344921 MMP10P09238 476 aa26.82■■□□□ 1.88
SMARCB1-202ENST00000344921 KIF6Q6ZMV9 814 aa26.82■■□□□ 1.88
SMARCB1-202ENST00000344921 AIMP1Q12904 312 aaKnown RBP26.82■■□□□ 1.88
SMARCB1-202ENST00000344921 CAMTA2O94983 1202 aa26.81■■□□□ 1.88
SMARCB1-202ENST00000344921 COL24A1Q17RW2 1714 aa26.8■■□□□ 1.88
SMARCB1-202ENST00000344921 TTLL7Q6ZT98 887 aa26.8■■□□□ 1.88
SMARCB1-202ENST00000344921 BCL2L12Q9HB09 334 aa26.8■■□□□ 1.88
SMARCB1-202ENST00000344921 BICDL1Q6ZP65 573 aa26.79■■□□□ 1.88
SMARCB1-202ENST00000344921 KLHL34Q8N239 644 aa26.79■■□□□ 1.88
SMARCB1-202ENST00000344921 STK31Q9BXU1 1019 aa26.79■■□□□ 1.88
SMARCB1-202ENST00000344921 ZNF652Q9Y2D9 606 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms