RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MSH6P52701 1360 aa18.26■□□□□ 0.51
SHH-201ENST00000297261 PDCP20941 246 aa18.26■□□□□ 0.51
SHH-201ENST00000297261 KINO60870 393 aaKnown RBP18.25■□□□□ 0.51
SHH-201ENST00000297261 CNTROBQ8N137 903 aa18.25■□□□□ 0.51
SHH-201ENST00000297261 MYL6BP14649 208 aa18.25■□□□□ 0.51
SHH-201ENST00000297261 FERMT3Q86UX7 667 aa18.25■□□□□ 0.51
SHH-201ENST00000297261 CABLES1Q8TDN4 633 aa18.25■□□□□ 0.51
SHH-201ENST00000297261 KIAA1210Q9ULL0 1709 aa18.25■□□□□ 0.51
SHH-201ENST00000297261 TRMT2AQ8IZ69 625 aaKnown RBP18.25■□□□□ 0.51
SHH-201ENST00000297261 KRT85P78386 507 aa18.25■□□□□ 0.51
SHH-201ENST00000297261 G3BP1Q13283 466 aaKnown RBP eCLIP18.25■□□□□ 0.51
SHH-201ENST00000297261 EXOC6BQ9Y2D4 811 aa18.25■□□□□ 0.51
SHH-201ENST00000297261 ARHGEF40Q8TER5 1519 aa18.24■□□□□ 0.51
SHH-201ENST00000297261 BMP2KLQ5H9B9 411 aa18.24■□□□□ 0.51
SHH-201ENST00000297261 LARP1BQ659C4 914 aaKnown RBP18.24■□□□□ 0.51
SHH-201ENST00000297261 RPAP2Q8IXW5 612 aaPredicted RBP18.24■□□□□ 0.51
SHH-201ENST00000297261 HSP90B2PQ58FF3 399 aa18.24■□□□□ 0.51
SHH-201ENST00000297261 CLASRPQ8N2M8 674 aaKnown RBP18.24■□□□□ 0.51
SHH-201ENST00000297261 PDILTQ8N807 584 aa18.24■□□□□ 0.51
SHH-201ENST00000297261 NPHP3Q7Z494 1330 aa18.24■□□□□ 0.51
SHH-201ENST00000297261 PREX1Q8TCU6 1659 aa18.24■□□□□ 0.51
SHH-201ENST00000297261 FLIIQ13045 1269 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 PTPRMP28827 1452 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 CAMK4Q16566 473 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 ARHGAP45Q92619 1136 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 TRERF1Q96PN7 1200 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 NAT10Q9H0A0 1025 aaKnown RBP18.23■□□□□ 0.51
SHH-201ENST00000297261 IL1RAPL2Q9NP60 686 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 ADGRB1O14514 1584 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 OFD1O75665 1012 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 TPM1P09493 284 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 STK3Q13188 491 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 IP6K1Q92551 441 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 LRRCC1Q9C099 1032 aa18.23■□□□□ 0.51
SHH-201ENST00000297261 SKIDA1Q1XH10 827 aa18.22■□□□□ 0.51
SHH-201ENST00000297261 HSP90AB4PQ58FF6 505 aa18.22■□□□□ 0.51
SHH-201ENST00000297261 MCM5P33992 734 aa18.22■□□□□ 0.51
SHH-201ENST00000297261 PRIM1P49642 420 aaKnown RBP18.22■□□□□ 0.51
SHH-201ENST00000297261 NCBP3Q53F19 620 aaKnown RBP18.22■□□□□ 0.51
SHH-201ENST00000297261 NUP62CLQ9H1M0 184 aa18.22■□□□□ 0.51
SHH-201ENST00000297261 PTPRCP08575 1304 aa18.22■□□□□ 0.51
SHH-201ENST00000297261 C16orf45Q96MC5 204 aaPredicted RBP18.22■□□□□ 0.51
SHH-201ENST00000297261 TSR1Q2NL82 804 aaKnown RBP18.21■□□□□ 0.51
SHH-201ENST00000297261 FAM177A1Q8N128 213 aaPredicted RBP18.21■□□□□ 0.51
SHH-201ENST00000297261 AATKQ6ZMQ8 1374 aa18.21■□□□□ 0.51
SHH-201ENST00000297261 USP6P35125 1406 aa18.21■□□□□ 0.51
SHH-201ENST00000297261 SYNE3Q6ZMZ3 975 aa18.21■□□□□ 0.51
SHH-201ENST00000297261 ZKSCAN5Q9Y2L8 839 aa18.21■□□□□ 0.51
SHH-201ENST00000297261 ADCY5O95622 1261 aa18.21■□□□□ 0.51
SHH-201ENST00000297261 SETQ01105 290 aaPredicted RBP18.21■□□□□ 0.51
SHH-201ENST00000297261 CPLX2Q6PUV4 134 aaKnown RBP18.2■□□□□ 0.5
SHH-201ENST00000297261 CYP46A1Q9Y6A2 500 aa18.2■□□□□ 0.5
SHH-201ENST00000297261 PSMA5P28066 241 aa18.2■□□□□ 0.5
SHH-201ENST00000297261 KDM2BQ8NHM5 1336 aa18.2■□□□□ 0.5
SHH-201ENST00000297261 IGSF3O75054 1194 aa18.2■□□□□ 0.5
SHH-201ENST00000297261 LARP6Q9BRS8 491 aaKnown RBP18.2■□□□□ 0.5
SHH-201ENST00000297261 FSD1Q9BTV5 496 aa18.2■□□□□ 0.5
SHH-201ENST00000297261 RICTORQ6R327 1708 aa18.2■□□□□ 0.5
SHH-201ENST00000297261 HCLS1P14317 486 aaPredicted RBP18.19■□□□□ 0.5
SHH-201ENST00000297261 NEURL4Q96JN8 1562 aa18.19■□□□□ 0.5
SHH-201ENST00000297261 TTLL5Q6EMB2 1281 aa18.19■□□□□ 0.5
SHH-201ENST00000297261 CHMP4CQ96CF2 233 aa18.19■□□□□ 0.5
SHH-201ENST00000297261 ANXA1P04083 346 aa18.19■□□□□ 0.5
SHH-201ENST00000297261 NOM1Q5C9Z4 860 aaKnown RBP18.19■□□□□ 0.5
SHH-201ENST00000297261 CWC15Q9P013 229 aaKnown RBP18.19■□□□□ 0.5
SHH-201ENST00000297261 CCDC183Q5T5S1 534 aa18.18■□□□□ 0.5
SHH-201ENST00000297261 DDX17Q92841 729 aaKnown RBP18.18■□□□□ 0.5
SHH-201ENST00000297261 SRGAP3O43295 1099 aa18.18■□□□□ 0.5
SHH-201ENST00000297261 TTC12Q9H892 705 aaPredicted RBP18.18■□□□□ 0.5
SHH-201ENST00000297261 MAP3K11Q16584 847 aa18.18■□□□□ 0.5
SHH-201ENST00000297261 CWC27Q6UX04 472 aaKnown RBP18.17■□□□□ 0.5
SHH-201ENST00000297261 NUTM2BA6NNL0 878 aaPredicted RBP18.17■□□□□ 0.5
SHH-201ENST00000297261 NUTM2EB1AL46 878 aaPredicted RBP18.17■□□□□ 0.5
SHH-201ENST00000297261 LRSAM1Q6UWE0 723 aa18.17■□□□□ 0.5
SHH-201ENST00000297261 NUTM2AQ8IVF1 878 aaPredicted RBP18.17■□□□□ 0.5
SHH-201ENST00000297261 HDAC1Q13547 482 aaPredicted RBP18.17■□□□□ 0.5
SHH-201ENST00000297261 SPATA32Q96LK8 384 aa18.17■□□□□ 0.5
SHH-201ENST00000297261 RAB3GAP1Q15042 981 aa18.17■□□□□ 0.5
SHH-201ENST00000297261 JAKMIP1Q96N16 626 aaKnown RBP18.17■□□□□ 0.5
SHH-201ENST00000297261 PPLO60437 1756 aa18.17■□□□□ 0.5
SHH-201ENST00000297261 MAP3K5Q99683 1374 aa18.16■□□□□ 0.5
SHH-201ENST00000297261 NPHP4O75161 1426 aaPredicted RBP18.16■□□□□ 0.5
SHH-201ENST00000297261 TNNT1P13805 278 aa18.16■□□□□ 0.5
SHH-201ENST00000297261 MEIS3Q99687 375 aa18.16■□□□□ 0.5
SHH-201ENST00000297261 KDM4AO75164 1064 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 NOLC1Q14978 699 aaKnown RBP eCLIP18.15■□□□□ 0.5
SHH-201ENST00000297261 AKAP4Q5JQC9 854 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 CCDC83Q8IWF9 413 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 CKAP2LQ8IYA6 745 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 FAM177BA6PVY3 158 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 CHL1O00533 1208 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 PTCD1O75127 700 aaKnown RBP18.15■□□□□ 0.5
SHH-201ENST00000297261 IPO7O95373 1038 aaKnown RBP18.15■□□□□ 0.5
SHH-201ENST00000297261 TRIM29Q14134 588 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 ZBTB40Q9NUA8 1239 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 ME1P48163 572 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 IFNL2Q8IZJ0 200 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 SNX21Q969T3 373 aa18.15■□□□□ 0.5
SHH-201ENST00000297261 DBF4Q9UBU7 674 aaPredicted RBP18.15■□□□□ 0.5
SHH-201ENST00000297261 PIP4K2BP78356 416 aa18.14■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms