RNA–Protein interactions for RNA: snR50

snR50, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR50, Length 90 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR50	snR50	RPN1	P38764	993 aa	Known RBP	0.93	□□□□□ -2.26
snR50	snR50	YAR028W	P39548	234 aa		0.93	□□□□□ -2.26
snR50	snR50	RSP5	P39940	809 aa	Known RBP	0.93	□□□□□ -2.26
snR50	snR50	BIM1	P40013	344 aa		0.93	□□□□□ -2.26
snR50	snR50	ATG32	P40458	529 aa		0.93	□□□□□ -2.26
snR50	snR50	RPL34B	P40525	121 aa	Known RBP	0.93	□□□□□ -2.26
snR50	snR50	GEP3	Q08622	556 aa		0.93	□□□□□ -2.26
snR50	snR50	MRH1	Q12117	320 aa	Predicted RBP	0.93	□□□□□ -2.26
snR50	snR50	COQ4	O13525	335 aa		0.92	□□□□□ -2.26
snR50	snR50	RRN6	P32786	894 aa		0.92	□□□□□ -2.26
snR50	snR50	YKL077W	P36081	392 aa		0.92	□□□□□ -2.26
snR50	snR50	TGL4	P36165	910 aa		0.92	□□□□□ -2.26
snR50	snR50	CCZ1	P38273	704 aa		0.92	□□□□□ -2.26
snR50	snR50	PIK1	P39104	1066 aa		0.92	□□□□□ -2.26
snR50	snR50	TAH11	P47112	604 aa		0.92	□□□□□ -2.26
snR50	snR50	SUT1	P53032	299 aa	Known RBP	0.92	□□□□□ -2.26
snR50	snR50	MPS1	P54199	764 aa		0.92	□□□□□ -2.26
snR50	snR50	RSC4	Q02206	625 aa		0.92	□□□□□ -2.26
snR50	snR50	RSM24	Q03976	319 aa		0.92	□□□□□ -2.26
snR50	snR50	PMT7	Q06644	662 aa		0.92	□□□□□ -2.26
snR50	snR50	PUN1	Q06991	263 aa		0.92	□□□□□ -2.26
snR50	snR50	NOB1	Q08444	459 aa	Known RBP	0.92	□□□□□ -2.26
snR50	snR50	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	0.92	□□□□□ -2.26	not detected
snR50	snR50	LSO1	Q3E827	93 aa		0.92	□□□□□ -2.26
snR50	snR50	ILV6	P25605	309 aa	Known RBP	0.91	□□□□□ -2.26
snR50	snR50	ECM2	P38241	364 aa	Known RBP	0.91	□□□□□ -2.26
snR50	snR50	EXO5	P38289	585 aa		0.91	□□□□□ -2.26
snR50	snR50	SHU2	P38957	223 aa		0.91	□□□□□ -2.26
snR50	snR50	MTR4	P47047	1073 aa	Known RBP	0.91	□□□□□ -2.26
snR50	snR50	VPS53	P47061	822 aa		0.91	□□□□□ -2.26
snR50	snR50	YAF9	P53930	226 aa		0.91	□□□□□ -2.26
snR50	snR50	TIM44	Q01852	431 aa		0.91	□□□□□ -2.26
snR50	snR50	CWC15	Q03772	175 aa	Known RBP	0.91	□□□□□ -2.26
snR50	snR50	SIZ1	Q04195	904 aa		0.91	□□□□□ -2.26
snR50	snR50	LAP2	Q10740	671 aa		0.91	□□□□□ -2.26
snR50	snR50	RGT2	Q12300	763 aa		0.91	□□□□□ -2.26
snR50	snR50	RPP2A	P05319	106 aa	Known RBP	0.9	□□□□□ -2.27
snR50	snR50	LEU3	P08638	886 aa		0.9	□□□□□ -2.27
snR50	snR50	TDP1	P38319	544 aa		0.9	□□□□□ -2.27
snR50	snR50	UBX7	P38349	436 aa		0.9	□□□□□ -2.27
snR50	snR50	QNS1	P38795	714 aa	Known RBP	0.9	□□□□□ -2.27
snR50	snR50	ZAP1	P47043	880 aa		0.9	□□□□□ -2.27
snR50	snR50	TNA1	P53322	534 aa		0.9	□□□□□ -2.27
snR50	snR50	ECM23	Q02710	187 aa		0.9	□□□□□ -2.27
snR50	snR50	RKM2	Q03942	479 aa		0.9	□□□□□ -2.27
snR50	snR50	ENB1	Q08299	606 aa		0.9	□□□□□ -2.27
snR50	snR50	KCS1	Q12494	1050 aa		0.9	□□□□□ -2.27
snR50	snR50	KIN2	P13186	1147 aa	Known RBP	0.89	□□□□□ -2.27
snR50	snR50	SNF5	P18480	905 aa		0.89	□□□□□ -2.27
snR50	snR50	RPB10	P22139	70 aa		0.89	□□□□□ -2.27
snR50	snR50	KTR4	P38131	464 aa		0.89	□□□□□ -2.27
snR50	snR50	RFC5	P38251	354 aa		0.89	□□□□□ -2.27
snR50	snR50	RVS167	P39743	482 aa	Known RBP	0.89	□□□□□ -2.27
snR50	snR50	RPN3	P40016	523 aa	Known RBP	0.89	□□□□□ -2.27
snR50	snR50	CHA4	P43634	648 aa		0.89	□□□□□ -2.27
snR50	snR50	HGH1	P48362	394 aa	Known RBP	0.89	□□□□□ -2.27
snR50	snR50	NUT1	P53114	1132 aa		0.89	□□□□□ -2.27
snR50	snR50	NOG1	Q02892	647 aa	Known RBP	0.89	□□□□□ -2.27
snR50	snR50	FLP1	P03870	423 aa		0.88	□□□□□ -2.27
snR50	snR50	HIS5	P07172	385 aa		0.88	□□□□□ -2.27
snR50	snR50	VMA4	P22203	233 aa	Known RBP	0.88	□□□□□ -2.27
snR50	snR50	ERG4	P25340	473 aa		0.88	□□□□□ -2.27
snR50	snR50	MET12	P46151	657 aa		0.88	□□□□□ -2.27
snR50	snR50	UFD2	P54860	961 aa		0.88	□□□□□ -2.27
snR50	snR50	HOS3	Q02959	697 aa	Known RBP	0.88	□□□□□ -2.27
snR50	snR50	UTP5	Q04177	643 aa	Known RBP	0.88	□□□□□ -2.27
snR50	snR50	ATG13	Q06628	738 aa		0.88	□□□□□ -2.27
snR50	snR50	ADY3	Q07732	790 aa		0.88	□□□□□ -2.27
snR50	snR50	RSB1	Q08417	382 aa		0.88	□□□□□ -2.27
snR50	snR50	TRM13	Q12383	476 aa		0.88	□□□□□ -2.27
snR50	snR50	ADY2	P25613	283 aa		0.87	□□□□□ -2.27
snR50	snR50	TTI1	P36097	1038 aa		0.87	□□□□□ -2.27
snR50	snR50	XKS1	P42826	600 aa		0.87	□□□□□ -2.27
snR50	snR50	BNA3	P47039	444 aa	Known RBP	0.87	□□□□□ -2.27
snR50	snR50	RAT1	Q02792	1006 aa	Known RBP	0.87	□□□□□ -2.27
snR50	snR50	MSC2	Q03455	724 aa		0.87	□□□□□ -2.27
snR50	snR50	PNP1	Q05788	311 aa		0.87	□□□□□ -2.27
snR50	snR50	GUP2	Q08929	609 aa		0.87	□□□□□ -2.27
snR50	snR50	VPS73	P53142	486 aa	Known RBP	0.86	□□□□□ -2.27
snR50	snR50	TPO1	Q07824	586 aa		0.86	□□□□□ -2.27
snR50	snR50	YPL260W	Q08977	551 aa		0.86	□□□□□ -2.27
snR50	snR50	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	0.85	□□□□□ -2.27	not detected
snR50	snR50	GFA1	P14742	717 aa	Known RBP	0.85	□□□□□ -2.27
snR50	snR50	APL1	P27351	700 aa		0.85	□□□□□ -2.27
snR50	snR50	KIP1	P28742	1111 aa		0.85	□□□□□ -2.27
snR50	snR50	ADD66	P36040	267 aa		0.85	□□□□□ -2.27
snR50	snR50	RDH54	P38086	958 aa		0.85	□□□□□ -2.27
snR50	snR50	ATG14	P38270	344 aa		0.85	□□□□□ -2.27
snR50	snR50	CCT4	P39078	528 aa	Known RBP	0.85	□□□□□ -2.27
snR50	snR50	MND2	P40577	368 aa		0.85	□□□□□ -2.27
snR50	snR50	YNL011C	P53980	444 aa		0.85	□□□□□ -2.27
snR50	snR50	BSC2	Q05611	235 aa		0.85	□□□□□ -2.27
snR50	snR50	MRI1	Q06489	411 aa	Known RBP	0.85	□□□□□ -2.27
snR50	snR50	HBT1	Q07653	1046 aa	Known RBP	0.85	□□□□□ -2.27
snR50	snR50	FUR4	P05316	633 aa	Known RBP	0.84	□□□□□ -2.27
snR50	snR50	PPR1	P07272	904 aa	Predicted RBP	0.84	□□□□□ -2.27
snR50	snR50	TRP4	P07285	380 aa	Predicted RBP	0.84	□□□□□ -2.27
snR50	snR50	PUP1	P25043	261 aa		0.84	□□□□□ -2.27
snR50	snR50	MSH3	P25336	1018 aa		0.84	□□□□□ -2.27
snR50	snR50	PEP7	P32609	515 aa		0.84	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 46.1 ms