RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	DUT1	P33317	147 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	KTR2	P33550	425 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	YBR197C	P38306	217 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	IES5	P40060	125 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	SAP155	P43612	1002 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	MTR4	P47047	1073 aa	Known RBP	4.71	□□□□□ -1.66
PUB1	YNL016W	CWH41	P53008	833 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	TYW3	P53177	273 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	YGR021W	P53212	290 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	YGR053C	P53234	283 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	SQS1	P53866	767 aa	Known RBP	4.71	□□□□□ -1.66
PUB1	YNL016W	ATG16	Q03818	150 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	not detected
PUB1	YNL016W	OXR1	Q08952	273 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	FLC1	Q08967	793 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	MHP1	P43638	1398 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	ADR1	P07248	1323 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	LEU2	P04173	364 aa	Predicted RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	RPN12	P32496	274 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	ISC10	P32645	267 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	NGR1	P32831	672 aa	Known RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	NFU1	P32860	256 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	RPS0A	P32905	252 aa	Known RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	TOS1	P38288	455 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	CIC1	P38779	376 aa	Known RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	HAL5	P38970	855 aa	Known RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	FAA3	P39002	694 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	RSP5	P39940	809 aa	Known RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	AIM9	P40053	627 aa	Known RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	YER156C	P40093	338 aa	Known RBP	4.7	□□□□□ -1.66
PUB1	YNL016W	MSN5	P52918	1224 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	BDS1	Q08347	646 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	SLX4	Q12098	748 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	BUG1	Q12191	341 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	RIM15	P43565	1770 aa		4.7	□□□□□ -1.66
PUB1	YNL016W	CTT1	P06115	562 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	ERR1	P0CX10	437 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	ERR2	P0CX11	437 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	RPL8A	P17076	256 aa	Known RBP	4.69	□□□□□ -1.66
PUB1	YNL016W	SPE2	P21182	396 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	MSH2	P25847	964 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	YKL069W	P36088	180 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	YNL011C	P53980	444 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	ADE16	P54113	591 aa	Known RBP	4.69	□□□□□ -1.66
PUB1	YNL016W	MEC3	Q02574	474 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	ENT2	Q05785	613 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	NTG2	Q08214	380 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	SIR4	P11978	1358 aa		4.69	□□□□□ -1.66
PUB1	YNL016W	PIF1	P07271	859 aa		4.68	□□□□□ -1.66
PUB1	YNL016W	PRI2	P20457	528 aa		4.68	□□□□□ -1.66
PUB1	YNL016W	NTH2	P35172	780 aa		4.68	□□□□□ -1.66
PUB1	YNL016W	IES1	P43579	692 aa		4.68	□□□□□ -1.66
PUB1	YNL016W	KIN4	Q01919	800 aa		4.68	□□□□□ -1.66
PUB1	YNL016W	MCD1	Q12158	566 aa		4.68	□□□□□ -1.66
PUB1	YNL016W	TMA17	Q12513	150 aa		4.68	□□□□□ -1.66
PUB1	YNL016W	TMA7	Q3E764	64 aa	Known RBP	4.68	□□□□□ -1.66
PUB1	YNL016W	RPO41	P13433	1351 aa	Known RBP	4.68	□□□□□ -1.66
PUB1	YNL016W	CYT1	P07143	309 aa		4.67	□□□□□ -1.66
PUB1	YNL016W	PRE9	P23638	258 aa	Known RBP	4.67	□□□□□ -1.66
PUB1	YNL016W	MCX1	P38323	520 aa	Predicted RBP	4.67	□□□□□ -1.66
PUB1	YNL016W	YHL008C	P38750	627 aa		4.67	□□□□□ -1.66
PUB1	YNL016W	GGA2	P38817	585 aa	Known RBP	4.67	□□□□□ -1.66
PUB1	YNL016W	YFR016C	P43597	1233 aa	Known RBP	4.67	□□□□□ -1.66
PUB1	YNL016W	RPS0B	P46654	252 aa	Known RBP	4.67	□□□□□ -1.66
PUB1	YNL016W	UTP22	P53254	1237 aa	Predicted RBP	4.67	□□□□□ -1.66
PUB1	YNL016W	YNR014W	P53719	212 aa		4.67	□□□□□ -1.66
PUB1	YNL016W	RSC4	Q02206	625 aa		4.67	□□□□□ -1.66
PUB1	YNL016W	NOC3	Q07896	663 aa	Predicted RBP	4.67	□□□□□ -1.66
PUB1	YNL016W	ERP4	Q12450	207 aa		4.67	□□□□□ -1.66
PUB1	YNL016W	MTC2	P34246	357 aa		4.66	□□□□□ -1.66
PUB1	YNL016W	MRPS18	P42847	217 aa		4.66	□□□□□ -1.66
PUB1	YNL016W	HDA3	Q06623	655 aa		4.66	□□□□□ -1.66
PUB1	YNL016W	MCA1	Q08601	432 aa		4.66	□□□□□ -1.66
PUB1	YNL016W	TOM1	Q03280	3268 aa		4.66	□□□□□ -1.66
PUB1	YNL016W	CIT1	P00890	479 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	CAN1	P04817	590 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	RPS6A	P0CX37	236 aa	Known RBP	4.65	□□□□□ -1.66
PUB1	YNL016W	RPS6B	P0CX38	236 aa	Predicted RBP	4.65	□□□□□ -1.66
PUB1	YNL016W	YKL222C	P35995	705 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	ERT1	P38140	529 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	HOS4	P40480	1083 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	LSB6	P42951	607 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	DAS1	P47005	663 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	YJR120W	P47157	116 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	ESC2	Q06340	456 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	ATG13	Q06628	738 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	YDR215C	Q12240	137 aa		4.65	□□□□□ -1.66
PUB1	YNL016W	SFP1	P32432	683 aa		4.65	□□□□□ -1.67
PUB1	YNL016W	HIR1	P32479	840 aa		4.65	□□□□□ -1.67
PUB1	YNL016W	STE5	P32917	917 aa		4.65	□□□□□ -1.67
PUB1	YNL016W	SLN1	P39928	1220 aa	Predicted RBP	4.65	□□□□□ -1.67
PUB1	YNL016W	YGR125W	P53273	1036 aa		4.65	□□□□□ -1.67
PUB1	YNL016W	SND1	Q04007	877 aa		4.65	□□□□□ -1.67
PUB1	YNL016W	ISR1	Q06098	443 aa	Known RBP	4.65	□□□□□ -1.67
PUB1	YNL016W	RIX7	Q07844	837 aa	Known RBP	4.65	□□□□□ -1.67
PUB1	YNL016W	RRI2	Q12348	645 aa		4.65	□□□□□ -1.67
PUB1	YNL016W	YML133C	Q03099	1374 aa		4.64	□□□□□ -1.67
PUB1	YNL016W	YLL067C	Q07888	1374 aa		4.64	□□□□□ -1.67
PUB1	YNL016W	YLL066C	Q99208	1374 aa		4.64	□□□□□ -1.67
PUB1	YNL016W	RPL8B	P29453	256 aa	Known RBP	4.64	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 9.9 ms