RNA–Protein interactions for RNA: YLR396C

VPS33, Transcript of ATP-binding protein that is a subunit of the HOPS and CORVET complexes, yeast

Gene VPS33, Length 2,076 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS33	YLR396C	TPP1	Q03796	238 aa		4.65	□□□□□ -1.67
VPS33	YLR396C	SPO21	Q12411	609 aa		4.65	□□□□□ -1.67
VPS33	YLR396C	SPA2	P23201	1466 aa	Known RBP	4.64	□□□□□ -1.67
VPS33	YLR396C	YER152C	P10356	443 aa		4.64	□□□□□ -1.67
VPS33	YLR396C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
VPS33	YLR396C	GPB2	P39717	880 aa		4.64	□□□□□ -1.67
VPS33	YLR396C	NAN1	Q02931	896 aa	Known RBP	4.64	□□□□□ -1.67
VPS33	YLR396C	NSE3	Q05541	303 aa		4.64	□□□□□ -1.67
VPS33	YLR396C	MRP8	P35719	219 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	CCT8	P47079	568 aa	Known RBP	4.63	□□□□□ -1.67
VPS33	YLR396C	YLR122C	Q12312	125 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	YVC1	Q12324	675 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	RAD4	P14736	754 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	COQ2	P32378	372 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	WHI3	P34761	661 aa	Known RBP	4.63	□□□□□ -1.67
VPS33	YLR396C	YBR184W	P38299	523 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	RPN3	P40016	523 aa	Known RBP	4.63	□□□□□ -1.67
VPS33	YLR396C	SIP5	P40210	489 aa	Known RBP	4.63	□□□□□ -1.67
VPS33	YLR396C	CIT3	P43635	486 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	BDF2	Q07442	638 aa		4.63	□□□□□ -1.67
VPS33	YLR396C	YSC84	P32793	468 aa		4.62	□□□□□ -1.67
VPS33	YLR396C	SNF7	P39929	240 aa	Known RBP	4.62	□□□□□ -1.67
VPS33	YLR396C	IRR1	P40541	1150 aa		4.62	□□□□□ -1.67
VPS33	YLR396C	YOR059C	Q08448	450 aa	Known RBP	4.62	□□□□□ -1.67
VPS33	YLR396C	CHS2	P14180	963 aa		4.61	□□□□□ -1.67
VPS33	YLR396C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
VPS33	YLR396C	MBP1	P39678	833 aa		4.61	□□□□□ -1.67
VPS33	YLR396C	RPL11A	P0C0W9	174 aa	Known RBP	4.61	□□□□□ -1.67
VPS33	YLR396C	SRP40	P32583	406 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS33	YLR396C	BAP2	P38084	609 aa		4.61	□□□□□ -1.67
VPS33	YLR396C	PBY1	P38254	753 aa		4.61	□□□□□ -1.67
VPS33	YLR396C	PNT1	P38969	423 aa		4.61	□□□□□ -1.67
VPS33	YLR396C	OYE3	P41816	400 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS33	YLR396C	PFD1	P46988	109 aa		4.61	□□□□□ -1.67
VPS33	YLR396C	HUL5	P53119	910 aa		4.61	□□□□□ -1.67
VPS33	YLR396C	HOS3	Q02959	697 aa	Known RBP	4.61	□□□□□ -1.67
VPS33	YLR396C	RPL11B	Q3E757	174 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS33	YLR396C	SAM35	P14693	329 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	SNF5	P18480	905 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	MSB1	P21339	1137 aa	Known RBP	4.6	□□□□□ -1.67
VPS33	YLR396C	DBP2	P24783	546 aa	Known RBP	4.6	□□□□□ -1.67
VPS33	YLR396C	KAE1	P36132	386 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	YHR020W	P38708	688 aa	Known RBP	4.6	□□□□□ -1.67
VPS33	YLR396C	RCM1	P53972	490 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	SPP382	Q06411	708 aa	Predicted RBP	4.6	□□□□□ -1.67
VPS33	YLR396C	CDC53	Q12018	815 aa	Known RBP	4.6	□□□□□ -1.67
VPS33	YLR396C	SBP1	P10080	294 aa	Known RBP	4.6	□□□□□ -1.67
VPS33	YLR396C	YHL012W	P38709	493 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	TIM54	P47045	478 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	RPN4	Q03465	531 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	FMP25	Q08023	583 aa		4.6	□□□□□ -1.67
VPS33	YLR396C	RCL1	Q08096	367 aa	Predicted RBP	4.6	□□□□□ -1.67
VPS33	YLR396C	RPL8B	P29453	256 aa	Known RBP	4.59	□□□□□ -1.67
VPS33	YLR396C	MXR1	P40029	184 aa		4.59	□□□□□ -1.67
VPS33	YLR396C	YFL054C	P43549	646 aa		4.59	□□□□□ -1.67
VPS33	YLR396C	TNA1	P53322	534 aa		4.59	□□□□□ -1.67
VPS33	YLR396C	FPR4	Q06205	392 aa	Predicted RBP	4.59	□□□□□ -1.67
VPS33	YLR396C	YKL091C	P33324	310 aa	Known RBP	4.58	□□□□□ -1.68
VPS33	YLR396C	PEX7	P39108	375 aa		4.58	□□□□□ -1.68
VPS33	YLR396C	SPO75	Q07798	868 aa		4.58	□□□□□ -1.68
VPS33	YLR396C	SRO9	P25567	434 aa	Known RBP	4.58	□□□□□ -1.68
VPS33	YLR396C	YGR130C	P53278	816 aa		4.58	□□□□□ -1.68
VPS33	YLR396C	TRE1	Q08919	783 aa		4.58	□□□□□ -1.68
VPS33	YLR396C	COQ4	O13525	335 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	MDL2	P33311	773 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	BUD6	P41697	788 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	LSB3	P43603	459 aa	Known RBP	4.57	□□□□□ -1.68
VPS33	YLR396C	FLC1	Q08967	793 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	ACM1	Q08981	209 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	PRP9	P19736	530 aa	Known RBP	4.57	□□□□□ -1.68
VPS33	YLR396C	SLA2	P33338	968 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	UTP8	P53276	713 aa	Known RBP	4.57	□□□□□ -1.68
VPS33	YLR396C	PPM2	Q08282	695 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	OSH2	Q12451	1283 aa		4.57	□□□□□ -1.68
VPS33	YLR396C	TRP3	P00937	484 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	GCD1	P09032	578 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS33	YLR396C	UGA2	P38067	497 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	CCZ1	P38273	704 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	PIK1	P39104	1066 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	GEM1	P39722	662 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
VPS33	YLR396C	ERP6	P53198	216 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	EAF1	Q06337	982 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	YOR131C	Q12486	218 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	SGS1	P35187	1447 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	SSN2	P38931	1420 aa		4.56	□□□□□ -1.68
VPS33	YLR396C	HSP60	P19882	572 aa	Known RBP	4.55	□□□□□ -1.68
VPS33	YLR396C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
VPS33	YLR396C	NOP2	P40991	618 aa	Known RBP	4.55	□□□□□ -1.68
VPS33	YLR396C	YGR125W	P53273	1036 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	MTC5	Q03897	1148 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	RSC58	Q07979	502 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	CYC7	P00045	113 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	CIT2	P08679	460 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	HBS1	P32769	611 aa	Known RBP	4.55	□□□□□ -1.68
VPS33	YLR396C	YKR073C	P36153	106 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	RSP5	P39940	809 aa	Known RBP	4.55	□□□□□ -1.68
VPS33	YLR396C	ALR2	P43553	858 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	NSI1	Q12457	570 aa		4.55	□□□□□ -1.68
VPS33	YLR396C	CIT1	P00890	479 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms