RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W RPN2P32565 945 aaKnown RBP3.57□□□□□ -1.84
USE1YGL098W YEL1P34225 687 aa3.57□□□□□ -1.84
USE1YGL098W SQT1P35184 431 aa3.57□□□□□ -1.84
USE1YGL098W CSE4P36012 229 aa3.57□□□□□ -1.84
USE1YGL098W YKR018CP36114 725 aa3.57□□□□□ -1.84
USE1YGL098W ERC1P38767 581 aa3.57□□□□□ -1.84
USE1YGL098W HXT13P39924 564 aa3.57□□□□□ -1.84
USE1YGL098W GCN20P43535 752 aaKnown RBP3.57□□□□□ -1.84
USE1YGL098W ALD4P46367 519 aaKnown RBP3.57□□□□□ -1.84
USE1YGL098W TRS85P46944 698 aa3.57□□□□□ -1.84
USE1YGL098W SNT2P53127 1403 aa3.57□□□□□ -1.84
USE1YGL098W PDR18P53756 1333 aa3.57□□□□□ -1.84
USE1YGL098W NCS2P53923 493 aaPredicted RBP3.57□□□□□ -1.84
USE1YGL098W HEF3P53978 1044 aaKnown RBP3.57□□□□□ -1.84
USE1YGL098W BET4Q00618 327 aa3.57□□□□□ -1.84
USE1YGL098W MFM1Q02783 413 aa3.57□□□□□ -1.84
USE1YGL098W MMR1Q06324 491 aa3.57□□□□□ -1.84
USE1YGL098W THI22Q06490 572 aa3.57□□□□□ -1.84
USE1YGL098W ATG23Q06671 453 aa3.57□□□□□ -1.84
USE1YGL098W OSH2Q12451 1283 aa3.57□□□□□ -1.84
USE1YGL098W SNF2P22082 1703 aa3.56□□□□□ -1.84
USE1YGL098W LTE1P07866 1435 aa3.56□□□□□ -1.84
USE1YGL098W VAS1P07806 1104 aaKnown RBP3.56□□□□□ -1.84
USE1YGL098W STE6P12866 1290 aa3.56□□□□□ -1.84
USE1YGL098W TYR1P20049 452 aa3.56□□□□□ -1.84
USE1YGL098W PRX1P34227 261 aaKnown RBP3.56□□□□□ -1.84
USE1YGL098W ECM4P36156 370 aa3.56□□□□□ -1.84
USE1YGL098W ATG14P38270 344 aa3.56□□□□□ -1.84
USE1YGL098W ETP1P38748 585 aaKnown RBP3.56□□□□□ -1.84
USE1YGL098W BRL1P38770 471 aa3.56□□□□□ -1.84
USE1YGL098W ATG32P40458 529 aa3.56□□□□□ -1.84
USE1YGL098W TAF1P46677 1066 aa3.56□□□□□ -1.84
USE1YGL098W VPS53P47061 822 aa3.56□□□□□ -1.84
USE1YGL098W YGL242CP53066 181 aa3.56□□□□□ -1.84
USE1YGL098W TIM11P81449 96 aaPredicted RBP3.56□□□□□ -1.84
USE1YGL098W SEC5P89102 971 aa3.56□□□□□ -1.84
USE1YGL098W HPC2Q01448 625 aa3.56□□□□□ -1.84
USE1YGL098W CUS1Q02554 436 aaPredicted RBP3.56□□□□□ -1.84
USE1YGL098W VTC3Q02725 835 aa3.56□□□□□ -1.84
USE1YGL098W YKU80Q04437 629 aa3.56□□□□□ -1.84
USE1YGL098W ERB1Q04660 807 aaKnown RBP3.56□□□□□ -1.84
USE1YGL098W SYT1Q06836 1226 aa3.56□□□□□ -1.84
USE1YGL098W SDH5Q08230 162 aa3.56□□□□□ -1.84
USE1YGL098W MCM16Q12262 181 aa3.56□□□□□ -1.84
USE1YGL098W BRR1Q99177 341 aaPredicted RBP3.56□□□□□ -1.84
USE1YGL098W DDP1Q99321 188 aaKnown RBP3.56□□□□□ -1.84
USE1YGL098W YBT1P32386 1661 aa3.55□□□□□ -1.84
USE1YGL098W MDS3P53094 1487 aa3.55□□□□□ -1.84
USE1YGL098W MAK16P10962 306 aaPredicted RBP3.55□□□□□ -1.84
USE1YGL098W FRS2P15625 503 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W KAR2P16474 682 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W TUP1P16649 713 aa3.55□□□□□ -1.84
USE1YGL098W HCA4P20448 770 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W FAR1P21268 830 aa3.55□□□□□ -1.84
USE1YGL098W RPC19P28000 142 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W PDB1P32473 366 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W YNG2P38806 282 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W NUP60P39705 539 aa3.55□□□□□ -1.84
USE1YGL098W BIM1P40013 344 aa3.55□□□□□ -1.84
USE1YGL098W ARB1P40024 610 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W GVP36P40531 326 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W HUL4P40985 892 aa3.55□□□□□ -1.84
USE1YGL098W YJR079WP47126 109 aa3.55□□□□□ -1.84
USE1YGL098W RRP46P53256 223 aaPredicted RBP3.55□□□□□ -1.84
USE1YGL098W ESF2P53743 316 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W ALO1P54783 526 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W GIS1Q03833 894 aa3.55□□□□□ -1.84
USE1YGL098W YMR111CQ04461 462 aaPredicted RBP3.55□□□□□ -1.84
USE1YGL098W POB3Q04636 552 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W SPN1Q06505 410 aaPredicted RBP3.55□□□□□ -1.84
USE1YGL098W RRP9Q06506 573 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W UTP4Q06679 776 aaKnown RBP3.55□□□□□ -1.84
USE1YGL098W YPR084WQ06821 456 aa3.55□□□□□ -1.84
USE1YGL098W ENO2P00925 437 aaKnown RBP3.54□□□□□ -1.84
USE1YGL098W RAD1P06777 1100 aa3.54□□□□□ -1.84
USE1YGL098W TOM70P07213 617 aaKnown RBP3.54□□□□□ -1.84
USE1YGL098W DAL1P32375 460 aa3.54□□□□□ -1.84
USE1YGL098W HIR2P32480 875 aa3.54□□□□□ -1.84
USE1YGL098W ECM32P32644 1121 aaKnown RBP3.54□□□□□ -1.84
USE1YGL098W NPL6P32832 435 aa3.54□□□□□ -1.84
USE1YGL098W HSP78P33416 811 aa3.54□□□□□ -1.84
USE1YGL098W PTH2P34222 208 aa3.54□□□□□ -1.84
USE1YGL098W SRL3P36167 246 aa3.54□□□□□ -1.84
USE1YGL098W HSM3P38348 480 aa3.54□□□□□ -1.84
USE1YGL098W PPX1P38698 397 aa3.54□□□□□ -1.84
USE1YGL098W PIH1P38768 344 aa3.54□□□□□ -1.84
USE1YGL098W MRX1P40050 688 aa3.54□□□□□ -1.84
USE1YGL098W VID27P40157 782 aa3.54□□□□□ -1.84
USE1YGL098W VID28P40547 921 aa3.54□□□□□ -1.84
USE1YGL098W INA22P40576 216 aa3.54□□□□□ -1.84
USE1YGL098W YIR042CP40586 236 aa3.54□□□□□ -1.84
USE1YGL098W SAP185P40856 1058 aa3.54□□□□□ -1.84
USE1YGL098W SEC27P41811 889 aaKnown RBP3.54□□□□□ -1.84
USE1YGL098W GPD2P41911 440 aaKnown RBP3.54□□□□□ -1.84
USE1YGL098W EMP47P43555 445 aa3.54□□□□□ -1.84
USE1YGL098W DAS1P47005 663 aa3.54□□□□□ -1.84
USE1YGL098W MTR4P47047 1073 aaKnown RBP3.54□□□□□ -1.84
USE1YGL098W SHE10P53075 577 aa3.54□□□□□ -1.84
USE1YGL098W HXT17P53631 564 aa3.54□□□□□ -1.84
USE1YGL098W YNR014WP53719 212 aa3.54□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 28.8 ms