RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USE1	YGL098W	RPN2	P32565	945 aa	Known RBP	3.57	□□□□□ -1.84
USE1	YGL098W	YEL1	P34225	687 aa		3.57	□□□□□ -1.84
USE1	YGL098W	SQT1	P35184	431 aa		3.57	□□□□□ -1.84
USE1	YGL098W	CSE4	P36012	229 aa		3.57	□□□□□ -1.84
USE1	YGL098W	YKR018C	P36114	725 aa		3.57	□□□□□ -1.84
USE1	YGL098W	ERC1	P38767	581 aa		3.57	□□□□□ -1.84
USE1	YGL098W	HXT13	P39924	564 aa		3.57	□□□□□ -1.84
USE1	YGL098W	GCN20	P43535	752 aa	Known RBP	3.57	□□□□□ -1.84
USE1	YGL098W	ALD4	P46367	519 aa	Known RBP	3.57	□□□□□ -1.84
USE1	YGL098W	TRS85	P46944	698 aa		3.57	□□□□□ -1.84
USE1	YGL098W	SNT2	P53127	1403 aa		3.57	□□□□□ -1.84
USE1	YGL098W	PDR18	P53756	1333 aa		3.57	□□□□□ -1.84
USE1	YGL098W	NCS2	P53923	493 aa	Predicted RBP	3.57	□□□□□ -1.84
USE1	YGL098W	HEF3	P53978	1044 aa	Known RBP	3.57	□□□□□ -1.84
USE1	YGL098W	BET4	Q00618	327 aa		3.57	□□□□□ -1.84
USE1	YGL098W	MFM1	Q02783	413 aa		3.57	□□□□□ -1.84
USE1	YGL098W	MMR1	Q06324	491 aa		3.57	□□□□□ -1.84
USE1	YGL098W	THI22	Q06490	572 aa		3.57	□□□□□ -1.84
USE1	YGL098W	ATG23	Q06671	453 aa		3.57	□□□□□ -1.84
USE1	YGL098W	OSH2	Q12451	1283 aa		3.57	□□□□□ -1.84
USE1	YGL098W	SNF2	P22082	1703 aa		3.56	□□□□□ -1.84
USE1	YGL098W	LTE1	P07866	1435 aa		3.56	□□□□□ -1.84
USE1	YGL098W	VAS1	P07806	1104 aa	Known RBP	3.56	□□□□□ -1.84
USE1	YGL098W	STE6	P12866	1290 aa		3.56	□□□□□ -1.84
USE1	YGL098W	TYR1	P20049	452 aa		3.56	□□□□□ -1.84
USE1	YGL098W	PRX1	P34227	261 aa	Known RBP	3.56	□□□□□ -1.84
USE1	YGL098W	ECM4	P36156	370 aa		3.56	□□□□□ -1.84
USE1	YGL098W	ATG14	P38270	344 aa		3.56	□□□□□ -1.84
USE1	YGL098W	ETP1	P38748	585 aa	Known RBP	3.56	□□□□□ -1.84
USE1	YGL098W	BRL1	P38770	471 aa		3.56	□□□□□ -1.84
USE1	YGL098W	ATG32	P40458	529 aa		3.56	□□□□□ -1.84
USE1	YGL098W	TAF1	P46677	1066 aa		3.56	□□□□□ -1.84
USE1	YGL098W	VPS53	P47061	822 aa		3.56	□□□□□ -1.84
USE1	YGL098W	YGL242C	P53066	181 aa		3.56	□□□□□ -1.84
USE1	YGL098W	TIM11	P81449	96 aa	Predicted RBP	3.56	□□□□□ -1.84
USE1	YGL098W	SEC5	P89102	971 aa		3.56	□□□□□ -1.84
USE1	YGL098W	HPC2	Q01448	625 aa		3.56	□□□□□ -1.84
USE1	YGL098W	CUS1	Q02554	436 aa	Predicted RBP	3.56	□□□□□ -1.84
USE1	YGL098W	VTC3	Q02725	835 aa		3.56	□□□□□ -1.84
USE1	YGL098W	YKU80	Q04437	629 aa		3.56	□□□□□ -1.84
USE1	YGL098W	ERB1	Q04660	807 aa	Known RBP	3.56	□□□□□ -1.84
USE1	YGL098W	SYT1	Q06836	1226 aa		3.56	□□□□□ -1.84
USE1	YGL098W	SDH5	Q08230	162 aa		3.56	□□□□□ -1.84
USE1	YGL098W	MCM16	Q12262	181 aa		3.56	□□□□□ -1.84
USE1	YGL098W	BRR1	Q99177	341 aa	Predicted RBP	3.56	□□□□□ -1.84
USE1	YGL098W	DDP1	Q99321	188 aa	Known RBP	3.56	□□□□□ -1.84
USE1	YGL098W	YBT1	P32386	1661 aa		3.55	□□□□□ -1.84
USE1	YGL098W	MDS3	P53094	1487 aa		3.55	□□□□□ -1.84
USE1	YGL098W	MAK16	P10962	306 aa	Predicted RBP	3.55	□□□□□ -1.84
USE1	YGL098W	FRS2	P15625	503 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	KAR2	P16474	682 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	TUP1	P16649	713 aa		3.55	□□□□□ -1.84
USE1	YGL098W	HCA4	P20448	770 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	FAR1	P21268	830 aa		3.55	□□□□□ -1.84
USE1	YGL098W	RPC19	P28000	142 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	PDB1	P32473	366 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	YNG2	P38806	282 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	NUP60	P39705	539 aa		3.55	□□□□□ -1.84
USE1	YGL098W	BIM1	P40013	344 aa		3.55	□□□□□ -1.84
USE1	YGL098W	ARB1	P40024	610 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	GVP36	P40531	326 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	HUL4	P40985	892 aa		3.55	□□□□□ -1.84
USE1	YGL098W	YJR079W	P47126	109 aa		3.55	□□□□□ -1.84
USE1	YGL098W	RRP46	P53256	223 aa	Predicted RBP	3.55	□□□□□ -1.84
USE1	YGL098W	ESF2	P53743	316 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	ALO1	P54783	526 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	GIS1	Q03833	894 aa		3.55	□□□□□ -1.84
USE1	YGL098W	YMR111C	Q04461	462 aa	Predicted RBP	3.55	□□□□□ -1.84
USE1	YGL098W	POB3	Q04636	552 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	SPN1	Q06505	410 aa	Predicted RBP	3.55	□□□□□ -1.84
USE1	YGL098W	RRP9	Q06506	573 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	UTP4	Q06679	776 aa	Known RBP	3.55	□□□□□ -1.84
USE1	YGL098W	YPR084W	Q06821	456 aa		3.55	□□□□□ -1.84
USE1	YGL098W	ENO2	P00925	437 aa	Known RBP	3.54	□□□□□ -1.84
USE1	YGL098W	RAD1	P06777	1100 aa		3.54	□□□□□ -1.84
USE1	YGL098W	TOM70	P07213	617 aa	Known RBP	3.54	□□□□□ -1.84
USE1	YGL098W	DAL1	P32375	460 aa		3.54	□□□□□ -1.84
USE1	YGL098W	HIR2	P32480	875 aa		3.54	□□□□□ -1.84
USE1	YGL098W	ECM32	P32644	1121 aa	Known RBP	3.54	□□□□□ -1.84
USE1	YGL098W	NPL6	P32832	435 aa		3.54	□□□□□ -1.84
USE1	YGL098W	HSP78	P33416	811 aa		3.54	□□□□□ -1.84
USE1	YGL098W	PTH2	P34222	208 aa		3.54	□□□□□ -1.84
USE1	YGL098W	SRL3	P36167	246 aa		3.54	□□□□□ -1.84
USE1	YGL098W	HSM3	P38348	480 aa		3.54	□□□□□ -1.84
USE1	YGL098W	PPX1	P38698	397 aa		3.54	□□□□□ -1.84
USE1	YGL098W	PIH1	P38768	344 aa		3.54	□□□□□ -1.84
USE1	YGL098W	MRX1	P40050	688 aa		3.54	□□□□□ -1.84
USE1	YGL098W	VID27	P40157	782 aa		3.54	□□□□□ -1.84
USE1	YGL098W	VID28	P40547	921 aa		3.54	□□□□□ -1.84
USE1	YGL098W	INA22	P40576	216 aa		3.54	□□□□□ -1.84
USE1	YGL098W	YIR042C	P40586	236 aa		3.54	□□□□□ -1.84
USE1	YGL098W	SAP185	P40856	1058 aa		3.54	□□□□□ -1.84
USE1	YGL098W	SEC27	P41811	889 aa	Known RBP	3.54	□□□□□ -1.84
USE1	YGL098W	GPD2	P41911	440 aa	Known RBP	3.54	□□□□□ -1.84
USE1	YGL098W	EMP47	P43555	445 aa		3.54	□□□□□ -1.84
USE1	YGL098W	DAS1	P47005	663 aa		3.54	□□□□□ -1.84
USE1	YGL098W	MTR4	P47047	1073 aa	Known RBP	3.54	□□□□□ -1.84
USE1	YGL098W	SHE10	P53075	577 aa		3.54	□□□□□ -1.84
USE1	YGL098W	HXT17	P53631	564 aa		3.54	□□□□□ -1.84
USE1	YGL098W	YNR014W	P53719	212 aa		3.54	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 17.3 ms