RNA–Protein interactions for RNA: YDL225W

SHS1, Transcript of Component of the septin ring that is required for cytokinesis, yeast

Gene SHS1, Length 1,656 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHS1	YDL225W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.29	□□□□□ -1.72	not detected
SHS1	YDL225W	HRK1	Q08732	759 aa	Known RBP	4.29	□□□□□ -1.72
SHS1	YDL225W	YPL260W	Q08977	551 aa		4.29	□□□□□ -1.72
SHS1	YDL225W	YPL066W	Q12194	479 aa		4.29	□□□□□ -1.72
SHS1	YDL225W	RKM4	Q12504	494 aa		4.29	□□□□□ -1.72
SHS1	YDL225W	MSB1	P21339	1137 aa	Known RBP	4.28	□□□□□ -1.72
SHS1	YDL225W	PGM1	P33401	570 aa	Known RBP	4.28	□□□□□ -1.72
SHS1	YDL225W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.28	□□□□□ -1.72	not detected
SHS1	YDL225W	YKL107W	P34251	309 aa		4.28	□□□□□ -1.72
SHS1	YDL225W	VBA5	P36172	582 aa		4.28	□□□□□ -1.72
SHS1	YDL225W	GPB2	P39717	880 aa		4.28	□□□□□ -1.72
SHS1	YDL225W	YJL045W	P47052	634 aa		4.28	□□□□□ -1.72
SHS1	YDL225W	HNT2	P49775	206 aa		4.28	□□□□□ -1.72
SHS1	YDL225W	YOR059C	Q08448	450 aa	Known RBP	4.28	□□□□□ -1.72
SHS1	YDL225W	PUS7	Q08647	676 aa	Known RBP	4.28	□□□□□ -1.72
SHS1	YDL225W	SPO21	Q12411	609 aa		4.28	□□□□□ -1.72
SHS1	YDL225W	YER152C	P10356	443 aa		4.27	□□□□□ -1.73
SHS1	YDL225W	STE5	P32917	917 aa		4.27	□□□□□ -1.73
SHS1	YDL225W	WHI3	P34761	661 aa	Known RBP	4.27	□□□□□ -1.73
SHS1	YDL225W	YBR184W	P38299	523 aa		4.27	□□□□□ -1.73
SHS1	YDL225W	IOC3	P43596	787 aa		4.27	□□□□□ -1.73
SHS1	YDL225W	ORC1	P54784	914 aa	Predicted RBP	4.27	□□□□□ -1.73
SHS1	YDL225W	YLR122C	Q12312	125 aa		4.27	□□□□□ -1.73
SHS1	YDL225W	YTA7	P40340	1379 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	RAD4	P14736	754 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	SRP40	P32583	406 aa	Predicted RBP	4.26	□□□□□ -1.73
SHS1	YDL225W	SNF7	P39929	240 aa	Known RBP	4.26	□□□□□ -1.73
SHS1	YDL225W	CIT3	P43635	486 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	NAN1	Q02931	896 aa	Known RBP	4.26	□□□□□ -1.73
SHS1	YDL225W	GNT1	Q12096	491 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	CYC7	P00045	113 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	YSC84	P32793	468 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	LIP5	P32875	414 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	MBP1	P39678	833 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	SIP5	P40210	489 aa	Known RBP	4.26	□□□□□ -1.73
SHS1	YDL225W	IRR1	P40541	1150 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
SHS1	YDL225W	RCM1	P53972	490 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	NSE3	Q05541	303 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	CDC53	Q12018	815 aa	Known RBP	4.26	□□□□□ -1.73
SHS1	YDL225W	YVC1	Q12324	675 aa		4.26	□□□□□ -1.73
SHS1	YDL225W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
SHS1	YDL225W	MRP8	P35719	219 aa		4.25	□□□□□ -1.73
SHS1	YDL225W	HUL5	P53119	910 aa		4.25	□□□□□ -1.73
SHS1	YDL225W	HOS3	Q02959	697 aa	Known RBP	4.25	□□□□□ -1.73
SHS1	YDL225W	SPP382	Q06411	708 aa	Predicted RBP	4.25	□□□□□ -1.73
SHS1	YDL225W	BDF2	Q07442	638 aa		4.25	□□□□□ -1.73
SHS1	YDL225W	RPL11A	P0C0W9	174 aa	Known RBP	4.24	□□□□□ -1.73
SHS1	YDL225W	DBP2	P24783	546 aa	Known RBP	4.24	□□□□□ -1.73
SHS1	YDL225W	PBY1	P38254	753 aa		4.24	□□□□□ -1.73
SHS1	YDL225W	MXR1	P40029	184 aa		4.24	□□□□□ -1.73
SHS1	YDL225W	TIM54	P47045	478 aa		4.24	□□□□□ -1.73
SHS1	YDL225W	SPO75	Q07798	868 aa		4.24	□□□□□ -1.73
SHS1	YDL225W	RPL11B	Q3E757	174 aa	Predicted RBP	4.24	□□□□□ -1.73
SHS1	YDL225W	PNT1	P38969	423 aa		4.23	□□□□□ -1.73
SHS1	YDL225W	RPN3	P40016	523 aa	Known RBP	4.23	□□□□□ -1.73
SHS1	YDL225W	RCL1	Q08096	367 aa	Predicted RBP	4.23	□□□□□ -1.73
SHS1	YDL225W	TRP3	P00937	484 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	SAM35	P14693	329 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	RPL8B	P29453	256 aa	Known RBP	4.22	□□□□□ -1.73
SHS1	YDL225W	YKL091C	P33324	310 aa	Known RBP	4.22	□□□□□ -1.73
SHS1	YDL225W	TOS1	P38288	455 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	YHL012W	P38709	493 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	OYE3	P41816	400 aa	Predicted RBP	4.22	□□□□□ -1.73
SHS1	YDL225W	TNA1	P53322	534 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	EAF1	Q06337	982 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	FMP25	Q08023	583 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	TRE1	Q08919	783 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	OSH2	Q12451	1283 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	YOR131C	Q12486	218 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	BAP2	P38084	609 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	YHR020W	P38708	688 aa	Known RBP	4.22	□□□□□ -1.73
SHS1	YDL225W	YFL054C	P43549	646 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	PFD1	P46988	109 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	YGR125W	P53273	1036 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	FLC1	Q08967	793 aa		4.22	□□□□□ -1.73
SHS1	YDL225W	MDL2	P33311	773 aa		4.21	□□□□□ -1.74
SHS1	YDL225W	PEX7	P39108	375 aa		4.21	□□□□□ -1.74
SHS1	YDL225W	GEM1	P39722	662 aa		4.21	□□□□□ -1.74
SHS1	YDL225W	RPN4	Q03465	531 aa		4.21	□□□□□ -1.74
SHS1	YDL225W	FPR4	Q06205	392 aa	Predicted RBP	4.21	□□□□□ -1.74
SHS1	YDL225W	COQ4	O13525	335 aa		4.2	□□□□□ -1.74
SHS1	YDL225W	SNF5	P18480	905 aa		4.2	□□□□□ -1.74
SHS1	YDL225W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
SHS1	YDL225W	ERP6	P53198	216 aa		4.2	□□□□□ -1.74
SHS1	YDL225W	UTP8	P53276	713 aa	Known RBP	4.2	□□□□□ -1.74
SHS1	YDL225W	ACM1	Q08981	209 aa		4.2	□□□□□ -1.74
SHS1	YDL225W	HSP60	P19882	572 aa	Known RBP	4.19	□□□□□ -1.74
SHS1	YDL225W	SRO9	P25567	434 aa	Known RBP	4.19	□□□□□ -1.74
SHS1	YDL225W	ARE1	P25628	610 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	PRO1	P32264	428 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	CCZ1	P38273	704 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	PIK1	P39104	1066 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	RSP5	P39940	809 aa	Known RBP	4.19	□□□□□ -1.74
SHS1	YDL225W	BUD6	P41697	788 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	ALR2	P43553	858 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	INP52	P50942	1183 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	BRE4	Q07660	1125 aa		4.19	□□□□□ -1.74
SHS1	YDL225W	GCD1	P09032	578 aa	Predicted RBP	4.19	□□□□□ -1.74
SHS1	YDL225W	PRP9	P19736	530 aa	Known RBP	4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 128.9 ms