RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 NBPF26B4DH59 902 aa9.05□□□□□ -0.96
TCF4-249ENST00000625716 RBM6P78332 1123 aaKnown RBP9.05□□□□□ -0.96
TCF4-249ENST00000625716 KCNC4Q03721 635 aa9.05□□□□□ -0.96
TCF4-249ENST00000625716 NBPF8Q3BBV2 869 aa9.05□□□□□ -0.96
TCF4-249ENST00000625716 CABLES1Q8TDN4 633 aa9.05□□□□□ -0.96
TCF4-249ENST00000625716 TRPC5Q9UL62 973 aaPredicted RBP9.05□□□□□ -0.96
TCF4-249ENST00000625716 COL22A1Q8NFW1 1626 aaPredicted RBP9.05□□□□□ -0.96
TCF4-249ENST00000625716 RGPD8O14715 1765 aaPredicted RBP9.04□□□□□ -0.96
TCF4-249ENST00000625716 PPP4CP60510 307 aa9.04□□□□□ -0.96
TCF4-249ENST00000625716 FNBP4Q8N3X1 1017 aaPredicted RBP9.04□□□□□ -0.96
TCF4-249ENST00000625716 USP32Q8NFA0 1604 aa9.04□□□□□ -0.96
TCF4-249ENST00000625716 ACEP12821 1306 aa9.04□□□□□ -0.96
TCF4-249ENST00000625716 TRPM1Q7Z4N2 1603 aa9.03□□□□□ -0.96
TCF4-249ENST00000625716 PLEKHG3A1L390 1219 aa9.03□□□□□ -0.96
TCF4-249ENST00000625716 TJAP1Q5JTD0 557 aa9.03□□□□□ -0.96
TCF4-249ENST00000625716 EYA1Q99502 592 aa9.03□□□□□ -0.96
TCF4-249ENST00000625716 ATP7BP35670 1465 aa9.02□□□□□ -0.96
TCF4-249ENST00000625716 UNC5CLQ8IV45 518 aa9.02□□□□□ -0.97
TCF4-249ENST00000625716 CABP1Q9NZU7 370 aa9.02□□□□□ -0.97
TCF4-249ENST00000625716 PPIP5K1Q6PFW1 1433 aa9.02□□□□□ -0.97
TCF4-249ENST00000625716 POLR3AO14802 1390 aaPredicted RBP9.01□□□□□ -0.97
TCF4-249ENST00000625716 ITSN1Q15811 1721 aa9.01□□□□□ -0.97
TCF4-249ENST00000625716 ABTB2Q8N961 1025 aa9.01□□□□□ -0.97
TCF4-249ENST00000625716 CCDC9Q9Y3X0 531 aaKnown RBP9.01□□□□□ -0.97
TCF4-249ENST00000625716 PTGDRQ13258 359 aa9□□□□□ -0.97
TCF4-249ENST00000625716 NUTM2GQ5VZR2 741 aa9□□□□□ -0.97
TCF4-249ENST00000625716 CCER1Q8TC90 406 aaPredicted RBP9□□□□□ -0.97
TCF4-249ENST00000625716 TIMELESSQ9UNS1 1208 aa9□□□□□ -0.97
TCF4-249ENST00000625716 CDK12Q9NYV4 1490 aaPredicted RBP9□□□□□ -0.97
TCF4-249ENST00000625716 QRICH2Q9H0J4 1663 aa9□□□□□ -0.97
TCF4-249ENST00000625716 CLSPNQ9HAW4 1339 aa9□□□□□ -0.97
TCF4-249ENST00000625716 FAM83GA6ND36 823 aa8.99□□□□□ -0.97
TCF4-249ENST00000625716 SLC24A1O60721 1099 aa8.99□□□□□ -0.97
TCF4-249ENST00000625716 APLP1P51693 650 aa8.99□□□□□ -0.97
TCF4-249ENST00000625716 SWT1Q5T5J6 900 aaKnown RBP8.99□□□□□ -0.97
TCF4-249ENST00000625716 NLRP13Q86W25 1043 aa8.99□□□□□ -0.97
TCF4-249ENST00000625716 GJD4Q96KN9 370 aaPredicted RBP8.99□□□□□ -0.97
TCF4-249ENST00000625716 PRDM11Q9NQV5 511 aa8.99□□□□□ -0.97
TCF4-249ENST00000625716 RALGAPBQ86X10 1494 aa8.99□□□□□ -0.97
TCF4-249ENST00000625716 BRD4O60885 1362 aaPredicted RBP8.99□□□□□ -0.97
TCF4-249ENST00000625716 ATAD2Q6PL18 1390 aa8.99□□□□□ -0.97
TCF4-249ENST00000625716 BCL9LQ86UU0 1499 aa8.98□□□□□ -0.97
TCF4-249ENST00000625716 SEMA3EO15041 775 aa8.98□□□□□ -0.97
TCF4-249ENST00000625716 TMC1Q8TDI8 760 aa8.98□□□□□ -0.97
TCF4-249ENST00000625716 BTG4Q9NY30 223 aa8.98□□□□□ -0.97
TCF4-249ENST00000625716 ATRNO75882 1429 aa8.97□□□□□ -0.97
TCF4-249ENST00000625716 SLIT2O94813 1529 aa8.97□□□□□ -0.97
TCF4-249ENST00000625716 ZC3H6P61129 1189 aaKnown RBP8.97□□□□□ -0.97
TCF4-249ENST00000625716 VPS72Q15906 364 aa8.97□□□□□ -0.97
TCF4-249ENST00000625716 MTRQ99707 1265 aa8.97□□□□□ -0.97
TCF4-249ENST00000625716 TRPM3Q9HCF6 1732 aaPredicted RBP8.97□□□□□ -0.97
TCF4-249ENST00000625716 MARF1Q9Y4F3 1742 aaKnown RBP8.97□□□□□ -0.97
TCF4-249ENST00000625716 EVA1CP58658 441 aa8.96□□□□□ -0.98
TCF4-249ENST00000625716 PLCB2Q00722 1185 aa8.96□□□□□ -0.98
TCF4-249ENST00000625716 MYT1Q01538 1121 aa8.96□□□□□ -0.98
TCF4-249ENST00000625716 HDGFL2Q7Z4V5 671 aaPredicted RBP8.96□□□□□ -0.98
TCF4-249ENST00000625716 ZNF516Q92618 1163 aa8.96□□□□□ -0.98
TCF4-249ENST00000625716 TOPAZ1Q8N9V7 1692 aa8.96□□□□□ -0.98
TCF4-249ENST00000625716 SBNO2Q9Y2G9 1366 aa8.96□□□□□ -0.98
TCF4-249ENST00000625716 RGS12O14924 1447 aa8.96□□□□□ -0.98
TCF4-249ENST00000625716 ALS2Q96Q42 1657 aa8.95□□□□□ -0.98
TCF4-249ENST00000625716 ST20-MTHFSA0A0A6YYL1 179 aa8.95□□□□□ -0.98
TCF4-249ENST00000625716 ZBTB7CA1YPR0 619 aa8.95□□□□□ -0.98
TCF4-249ENST00000625716 KTN1Q86UP2 1357 aaKnown RBP8.95□□□□□ -0.98
TCF4-249ENST00000625716 USP6P35125 1406 aa8.95□□□□□ -0.98
TCF4-249ENST00000625716 RNF40O75150 1001 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 GCP02774 474 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 CHRNA2Q15822 529 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 FAM161AQ3B820 660 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 PUS7Q96PZ0 661 aaKnown RBP8.94□□□□□ -0.98
TCF4-249ENST00000625716 IRX2Q9BZI1 471 aaPredicted RBP8.94□□□□□ -0.98
TCF4-249ENST00000625716 STRN4Q9NRL3 753 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 TERF2IPQ9NYB0 399 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 TTC21AQ8NDW8 1320 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 KIAA0232Q92628 1395 aa8.94□□□□□ -0.98
TCF4-249ENST00000625716 TMF1P82094 1093 aa8.93□□□□□ -0.98
TCF4-249ENST00000625716 SEPT12Q8IYM1 358 aa8.93□□□□□ -0.98
TCF4-249ENST00000625716 IL21Q9HBE4 155 aa8.93□□□□□ -0.98
TCF4-249ENST00000625716 ADGRG1Q9Y653 693 aa8.93□□□□□ -0.98
TCF4-249ENST00000625716 TTC21BQ7Z4L5 1316 aa8.93□□□□□ -0.98
TCF4-249ENST00000625716 ABCA3Q99758 1704 aa8.93□□□□□ -0.98
TCF4-249ENST00000625716 COL14A1Q05707 1796 aaKnown RBP8.93□□□□□ -0.98
TCF4-249ENST00000625716 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.92□□□□□ -0.98
TCF4-249ENST00000625716 USP47Q96K76 1375 aa8.92□□□□□ -0.98
TCF4-249ENST00000625716 USP19O94966 1318 aa8.92□□□□□ -0.98
TCF4-249ENST00000625716 CDCA8Q53HL2 280 aa8.92□□□□□ -0.98
TCF4-249ENST00000625716 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.92□□□□□ -0.98
TCF4-249ENST00000625716 KCNH5Q8NCM2 988 aa8.92□□□□□ -0.98
TCF4-249ENST00000625716 SLC12A5Q9H2X9 1139 aa8.92□□□□□ -0.98
TCF4-249ENST00000625716 NWD2Q9ULI1 1742 aa8.91□□□□□ -0.98
TCF4-249ENST00000625716 PLCH1Q4KWH8 1693 aa8.91□□□□□ -0.98
TCF4-249ENST00000625716 SLF2Q8IX21 1173 aa8.91□□□□□ -0.98
TCF4-249ENST00000625716 NKX2-3Q8TAU0 364 aa8.91□□□□□ -0.98
TCF4-249ENST00000625716 TESK2Q96S53 571 aa8.91□□□□□ -0.98
TCF4-249ENST00000625716 CPSF1Q10570 1443 aaKnown RBP8.9□□□□□ -0.98
TCF4-249ENST00000625716 CPDO75976 1380 aa8.9□□□□□ -0.98
TCF4-249ENST00000625716 NINLQ9Y2I6 1382 aa8.9□□□□□ -0.98
TCF4-249ENST00000625716 SPATA31A5Q5VU36 1347 aa8.9□□□□□ -0.98
TCF4-249ENST00000625716 SPATA31A7Q8IWB4 1347 aa8.9□□□□□ -0.98
TCF4-249ENST00000625716 SF3B2Q13435 895 aaKnown RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms