RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CEBPZQ03701 1054 aaKnown RBP15.1■□□□□ 0.01
LIG1-221ENST00000613670 GOLGA6L19H0YKK7 550 aa15.1■□□□□ 0.01
LIG1-221ENST00000613670 CCDC183Q5T5S1 534 aa15.1■□□□□ 0.01
LIG1-221ENST00000613670 PALD1Q9ULE6 856 aa15.1■□□□□ 0.01
LIG1-221ENST00000613670 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.1■□□□□ 0.01
LIG1-221ENST00000613670 CPA1P15085 419 aa15.09■□□□□ 0.01
LIG1-221ENST00000613670 FAM69CQ0P6D2 419 aa15.09■□□□□ 0.01
LIG1-221ENST00000613670 LARP1BQ659C4 914 aaKnown RBP15.09■□□□□ 0.01
LIG1-221ENST00000613670 FAM184AQ8NB25 1140 aa15.09■□□□□ 0.01
LIG1-221ENST00000613670 PRPF40BQ6NWY9 871 aaKnown RBP15.09■□□□□ 0.01
LIG1-221ENST00000613670 ZHX1Q9UKY1 873 aaPredicted RBP15.09■□□□□ 0.01
LIG1-221ENST00000613670 BECN2A8MW95 431 aa15.09■□□□□ 0.01
LIG1-221ENST00000613670 HS1BP3Q53T59 392 aa15.08■□□□□ 0.01
LIG1-221ENST00000613670 PDRG1Q9NUG6 133 aa15.08■□□□□ 0.01
LIG1-221ENST00000613670 KIF3AQ9Y496 699 aa15.08■□□□□ 0.01
LIG1-221ENST00000613670 CYP46A1Q9Y6A2 500 aa15.08■□□□□ 0.01
LIG1-221ENST00000613670 ANXA1P04083 346 aa15.08■□□□□ 0
LIG1-221ENST00000613670 MCM5P33992 734 aa15.08■□□□□ 0
LIG1-221ENST00000613670 YTHDC2Q9H6S0 1430 aaKnown RBP15.08■□□□□ 0
LIG1-221ENST00000613670 STX6O43752 255 aa15.08■□□□□ 0
LIG1-221ENST00000613670 LETM1O95202 739 aaPredicted RBP15.08■□□□□ 0
LIG1-221ENST00000613670 CHMLP26374 656 aa15.08■□□□□ 0
LIG1-221ENST00000613670 MAP3K4Q9Y6R4 1608 aa15.08■□□□□ 0
LIG1-221ENST00000613670 DYNC1I1O14576 645 aa15.07■□□□□ 0
LIG1-221ENST00000613670 CCDC192P0DO97 292 aa15.07■□□□□ 0
LIG1-221ENST00000613670 USHBP1Q8N6Y0 703 aa15.07■□□□□ 0
LIG1-221ENST00000613670 SIL1Q9H173 461 aa15.07■□□□□ 0
LIG1-221ENST00000613670 RIMS2Q9UQ26 1411 aa15.07■□□□□ 0
LIG1-221ENST00000613670 PPP1R42Q7Z4L9 355 aa15.07■□□□□ 0
LIG1-221ENST00000613670 CKAP2LQ8IYA6 745 aa15.07■□□□□ 0
LIG1-221ENST00000613670 G3BP1Q13283 466 aaKnown RBP eCLIP15.07■□□□□ 04e-6■■■■□ 21.1
LIG1-221ENST00000613670 PNMA6EA0A0J9YXQ4 647 aa15.06■□□□□ 0
LIG1-221ENST00000613670 HTATSF1O43719 755 aaKnown RBP15.06■□□□□ 0
LIG1-221ENST00000613670 NOLC1Q14978 699 aaKnown RBP eCLIP15.06■□□□□ 04e-9■■■□□ 16.3
LIG1-221ENST00000613670 TCEANC2Q96MN5 208 aa15.06■□□□□ 0
LIG1-221ENST00000613670 FSD1Q9BTV5 496 aa15.06■□□□□ 0
LIG1-221ENST00000613670 LIMCH1Q9UPQ0 1083 aa15.06■□□□□ 0
LIG1-221ENST00000613670 HSP90AB4PQ58FF6 505 aa15.06■□□□□ 0
LIG1-221ENST00000613670 NECAB1Q8N987 351 aa15.06■□□□□ 0
LIG1-221ENST00000613670 TFIP11Q9UBB9 837 aaKnown RBP15.06■□□□□ 0
LIG1-221ENST00000613670 ZFYVE16Q7Z3T8 1539 aa15.05■□□□□ 0
LIG1-221ENST00000613670 TAF7Q15545 349 aaPredicted RBP15.05■□□□□ 0
LIG1-221ENST00000613670 MTHFSDQ2M296 383 aaKnown RBP15.05■□□□□ 0
LIG1-221ENST00000613670 ZNF771Q7L3S4 317 aaPredicted RBP15.05■□□□□ 0
LIG1-221ENST00000613670 ABCA6Q8N139 1617 aa15.05■□□□□ 0
LIG1-221ENST00000613670 NPHP1O15259 732 aa15.05■□□□□ -0
LIG1-221ENST00000613670 ZFYVE9O95405 1425 aa15.05■□□□□ -0
LIG1-221ENST00000613670 SPDYE4A6NLX3 237 aa15.05■□□□□ -0
LIG1-221ENST00000613670 KRT85P78386 507 aa15.05■□□□□ -0
LIG1-221ENST00000613670 TNMDQ9H2S6 317 aa15.05■□□□□ -0
LIG1-221ENST00000613670 EID1Q9Y6B2 187 aa15.05■□□□□ -0
LIG1-221ENST00000613670 IQGAP1P46940 1657 aa15.05■□□□□ -0
LIG1-221ENST00000613670 CHL1O00533 1208 aa15.04■□□□□ -0
LIG1-221ENST00000613670 DDIT3P35638 169 aa15.04■□□□□ -0
LIG1-221ENST00000613670 GJB2P29033 226 aa15.04■□□□□ -0
LIG1-221ENST00000613670 DNM1Q05193 864 aaKnown RBP15.04■□□□□ -0
LIG1-221ENST00000613670 SPHKAPQ2M3C7 1700 aa15.04■□□□□ -0
LIG1-221ENST00000613670 RTL1A6NKG5 1358 aa15.04■□□□□ -0
LIG1-221ENST00000613670 IQSEC2Q5JU85 1478 aa15.04■□□□□ -0
LIG1-221ENST00000613670 ZSCAN22P10073 491 aaPredicted RBP15.04■□□□□ -0
LIG1-221ENST00000613670 TPD52L1Q16890 204 aaPredicted RBP15.04■□□□□ -0
LIG1-221ENST00000613670 RNF20Q5VTR2 975 aa15.04■□□□□ -0
LIG1-221ENST00000613670 ABTB2Q8N961 1025 aa15.04■□□□□ -0
LIG1-221ENST00000613670 KIF1BPQ96EK5 621 aa15.04■□□□□ -0
LIG1-221ENST00000613670 ACEP12821 1306 aa15.04■□□□□ -0
LIG1-221ENST00000613670 GNAT3A8MTJ3 354 aa15.03■□□□□ -0
LIG1-221ENST00000613670 AACSQ86V21 672 aa15.03■□□□□ -0
LIG1-221ENST00000613670 NUP62CLQ9H1M0 184 aa15.03■□□□□ -0
LIG1-221ENST00000613670 NRDCO43847 1150 aa15.03■□□□□ -0
LIG1-221ENST00000613670 BRD1O95696 1058 aa15.03■□□□□ -0
LIG1-221ENST00000613670 ATP8B2P98198 1209 aa15.03■□□□□ -0
LIG1-221ENST00000613670 SF3A1Q15459 793 aaKnown RBP15.03■□□□□ -0
LIG1-221ENST00000613670 AK2P54819 239 aa15.02■□□□□ -0
LIG1-221ENST00000613670 UBE2HP62256 183 aa15.02■□□□□ -0
LIG1-221ENST00000613670 PDCL2Q8N4E4 241 aa15.02■□□□□ -0
LIG1-221ENST00000613670 RHPN1Q8TCX5 695 aa15.02■□□□□ -0
LIG1-221ENST00000613670 BRPF1P55201 1214 aaPredicted RBP15.02■□□□□ -0
LIG1-221ENST00000613670 ZNF853P0CG23 659 aa15.02□□□□□ -0.01
LIG1-221ENST00000613670 ZDHHC9Q9Y397 364 aa15.02□□□□□ -0.01
LIG1-221ENST00000613670 TET3O43151 1660 aa15.02□□□□□ -0.01
LIG1-221ENST00000613670 RNF17Q9BXT8 1623 aaKnown RBP15.01□□□□□ -0.01
LIG1-221ENST00000613670 RAB11FIP3O75154 756 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 SYT1P21579 422 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 ANAPC15P60006 121 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 PPP4R3BQ5MIZ7 849 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 DDX11Q96FC9 970 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 HDAC5Q9UQL6 1122 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 SPATA32Q96LK8 384 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 C16orf45Q96MC5 204 aaPredicted RBP15.01□□□□□ -0.01
LIG1-221ENST00000613670 CHMP4AQ9BY43 222 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 KIF1BO60333 1816 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 ZNF500O60304 480 aaPredicted RBP15.01□□□□□ -0.01
LIG1-221ENST00000613670 MAP3K11Q16584 847 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 UNC5CLQ8IV45 518 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 TTC21BQ7Z4L5 1316 aa15.01□□□□□ -0.01
LIG1-221ENST00000613670 C1orf141Q5JVX7 400 aa15□□□□□ -0.01
LIG1-221ENST00000613670 FAM173BQ6P4H8 233 aa15□□□□□ -0.01
LIG1-221ENST00000613670 BLOC1S2Q6QNY1 142 aa15□□□□□ -0.01
LIG1-221ENST00000613670 ZNF330Q9Y3S2 320 aaPredicted RBP15□□□□□ -0.01
LIG1-221ENST00000613670 PPFIA3O75145 1194 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms