RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 DUSP27Q5VZP5 1158 aa21.53■■□□□ 1.04
TPM1-219ENST00000559397 SLC52A2Q9HAB3 445 aa21.53■■□□□ 1.04
TPM1-219ENST00000559397 FAM196AQ6ZSG2 479 aa21.53■■□□□ 1.04
TPM1-219ENST00000559397 ACSBG1Q96GR2 724 aa21.53■■□□□ 1.04
TPM1-219ENST00000559397 KAT6BQ8WYB5 2073 aa21.52■■□□□ 1.04
TPM1-219ENST00000559397 PRIM1P49642 420 aaKnown RBP21.52■■□□□ 1.04
TPM1-219ENST00000559397 TEFQ10587 303 aa21.52■■□□□ 1.04
TPM1-219ENST00000559397 NFATC2IPQ8NCF5 419 aa21.52■■□□□ 1.04
TPM1-219ENST00000559397 NHSQ6T4R5 1651 aa21.51■■□□□ 1.03
TPM1-219ENST00000559397 CABP4P57796 275 aa21.51■■□□□ 1.03
TPM1-219ENST00000559397 CALD1Q05682 793 aaKnown RBP21.51■■□□□ 1.03
TPM1-219ENST00000559397 IL16Q14005 1332 aa21.51■■□□□ 1.03
TPM1-219ENST00000559397 E9PSI1 815 aa21.5■■□□□ 1.03
TPM1-219ENST00000559397 TAF7Q15545 349 aaPredicted RBP21.5■■□□□ 1.03
TPM1-219ENST00000559397 KCNQ2O43526 872 aa21.5■■□□□ 1.03
TPM1-219ENST00000559397 ZNF853P0CG23 659 aa21.5■■□□□ 1.03
TPM1-219ENST00000559397 SPINK5Q9NQ38 1064 aaPredicted RBP21.5■■□□□ 1.03
TPM1-219ENST00000559397 PIGBQ92521 554 aa21.49■■□□□ 1.03
TPM1-219ENST00000559397 TMOD3Q9NYL9 352 aa21.49■■□□□ 1.03
TPM1-219ENST00000559397 RCAN3Q9UKA8 241 aa21.49■■□□□ 1.03
TPM1-219ENST00000559397 CFAP44Q96MT7 982 aa21.48■■□□□ 1.03
TPM1-219ENST00000559397 IFT57Q9NWB7 429 aa21.48■■□□□ 1.03
TPM1-219ENST00000559397 CHL1O00533 1208 aa21.47■■□□□ 1.03
TPM1-219ENST00000559397 PTF1AQ7RTS3 328 aa21.47■■□□□ 1.03
TPM1-219ENST00000559397 SYTL4Q96C24 671 aaPredicted RBP21.47■■□□□ 1.03
TPM1-219ENST00000559397 ERICH6BQ5W0A0 696 aa21.47■■□□□ 1.03
TPM1-219ENST00000559397 BABAM1Q9NWV8 329 aa21.47■■□□□ 1.03
TPM1-219ENST00000559397 MIS18AQ9NYP9 233 aa21.47■■□□□ 1.03
TPM1-219ENST00000559397 KDM3BQ7LBC6 1761 aa21.46■■□□□ 1.03
TPM1-219ENST00000559397 PAPPAQ13219 1627 aa21.46■■□□□ 1.03
TPM1-219ENST00000559397 BTBD11A6QL63 1104 aa21.46■■□□□ 1.03
TPM1-219ENST00000559397 LAS1LQ9Y4W2 734 aaKnown RBP21.46■■□□□ 1.03
TPM1-219ENST00000559397 GNAI1P63096 354 aa21.45■■□□□ 1.02
TPM1-219ENST00000559397 BCL11BQ9C0K0 894 aaPredicted RBP21.44■■□□□ 1.02
TPM1-219ENST00000559397 BTAF1O14981 1849 aa21.44■■□□□ 1.02
TPM1-219ENST00000559397 MBIPQ9NS73 344 aa21.44■■□□□ 1.02
TPM1-219ENST00000559397 TSPYL4Q9UJ04 414 aa21.44■■□□□ 1.02
TPM1-219ENST00000559397 TRIM37O94972 964 aa21.43■■□□□ 1.02
TPM1-219ENST00000559397 SLC39A6Q13433 755 aa21.43■■□□□ 1.02
TPM1-219ENST00000559397 KCNQ3O43525 872 aa21.42■■□□□ 1.02
TPM1-219ENST00000559397 ATG3Q9NT62 314 aa21.42■■□□□ 1.02
TPM1-219ENST00000559397 ASAP1Q9ULH1 1129 aa21.42■■□□□ 1.02
TPM1-219ENST00000559397 ZNF790Q6PG37 636 aa21.41■■□□□ 1.02
TPM1-219ENST00000559397 TSR2Q969E8 191 aaKnown RBP21.41■■□□□ 1.02
TPM1-219ENST00000559397 UBR2Q8IWV8 1755 aa21.41■■□□□ 1.02
TPM1-219ENST00000559397 IRX6P78412 446 aaPredicted RBP21.4■■□□□ 1.02
TPM1-219ENST00000559397 MYH16Q9H6N6 1097 aa21.4■■□□□ 1.02
TPM1-219ENST00000559397 FANCIQ9NVI1 1328 aa21.4■■□□□ 1.02
TPM1-219ENST00000559397 RRP1P56182 461 aaKnown RBP21.4■■□□□ 1.02
TPM1-219ENST00000559397 TNS1Q9HBL0 1735 aaKnown RBP21.39■■□□□ 1.01
TPM1-219ENST00000559397 KCPQ6ZWJ8 1503 aa21.39■■□□□ 1.01
TPM1-219ENST00000559397 EIF4A1P60842 406 aaKnown RBP21.37■■□□□ 1.01
TPM1-219ENST00000559397 TTC5Q8N0Z6 440 aa21.37■■□□□ 1.01
TPM1-219ENST00000559397 ILDR2Q71H61 639 aa21.36■■□□□ 1.01
TPM1-219ENST00000559397 SMARCC1Q92922 1105 aaPredicted RBP21.36■■□□□ 1.01
TPM1-219ENST00000559397 ZNF496Q96IT1 587 aaPredicted RBP21.36■■□□□ 1.01
TPM1-219ENST00000559397 HEG1Q9ULI3 1381 aa21.36■■□□□ 1.01
TPM1-219ENST00000559397 PALLDQ8WX93 1383 aa21.35■■□□□ 1.01
TPM1-219ENST00000559397 LY75O60449 1722 aa21.34■■□□□ 1.01
TPM1-219ENST00000559397 KRT24Q2M2I5 525 aa21.34■■□□□ 1.01
TPM1-219ENST00000559397 FMNL2Q96PY5 1086 aa21.34■■□□□ 1.01
TPM1-219ENST00000559397 PTCD1O75127 700 aaKnown RBP21.33■■□□□ 1
TPM1-219ENST00000559397 SLC4A9Q96Q91 983 aa21.33■■□□□ 1
TPM1-219ENST00000559397 EXOSC9Q06265 439 aaKnown RBP21.32■■□□□ 1
TPM1-219ENST00000559397 C8orf58Q8NAV2 365 aa21.32■■□□□ 1
TPM1-219ENST00000559397 PLSCR1O15162 318 aa21.31■■□□□ 1
TPM1-219ENST00000559397 APBA3O96018 575 aa21.31■■□□□ 1
TPM1-219ENST00000559397 LOC102724428A0A0B4J2F2 783 aa21.31■■□□□ 1
TPM1-219ENST00000559397 GIGYF1O75420 1035 aaPredicted RBP21.31■■□□□ 1
TPM1-219ENST00000559397 SIK1P57059 783 aa21.31■■□□□ 1
TPM1-219ENST00000559397 VSIG10Q8N0Z9 540 aa21.31■■□□□ 1
TPM1-219ENST00000559397 TSPYL6Q8N831 410 aa21.31■■□□□ 1
TPM1-219ENST00000559397 RBM42Q9BTD8 480 aaKnown RBP21.31■■□□□ 1
TPM1-219ENST00000559397 ZNF831Q5JPB2 1677 aa21.31■■□□□ 1
TPM1-219ENST00000559397 C5P01031 1676 aa21.3■■□□□ 1
TPM1-219ENST00000559397 CICQ96RK0 1608 aaPredicted RBP21.29■■□□□ 1
TPM1-219ENST00000559397 RGPD3A6NKT7 1758 aaPredicted RBP21.29■■□□□ 1
TPM1-219ENST00000559397 RGPD4Q7Z3J3 1758 aa21.29■■□□□ 1
TPM1-219ENST00000559397 PRAMEF22A3QJZ6 481 aa21.29■■□□□ 1
TPM1-219ENST00000559397 PPP4R2Q9NY27 417 aa21.29■■□□□ 1
TPM1-219ENST00000559397 TJP1Q07157 1748 aa21.28■■□□□ 1
TPM1-219ENST00000559397 SNRPA1P09661 255 aaKnown RBP21.28■■□□□ 1
TPM1-219ENST00000559397 CCDC125Q86Z20 511 aa21.28■■□□□ 1
TPM1-219ENST00000559397 ELL2O00472 640 aaPredicted RBP21.27■■□□□ 1
TPM1-219ENST00000559397 VAMP4O75379 141 aa21.27■■□□□ 1
TPM1-219ENST00000559397 CT47B1P0C2W7 299 aaPredicted RBP21.27■■□□□ 1
TPM1-219ENST00000559397 TWISTNBQ3B726 338 aaPredicted RBP21.27■■□□□ 1
TPM1-219ENST00000559397 HOXB7P09629 217 aa21.26■□□□□ 0.99
TPM1-219ENST00000559397 ATP6V1AP38606 617 aa21.26■□□□□ 0.99
TPM1-219ENST00000559397 PROM2Q8N271 834 aa21.26■□□□□ 0.99
TPM1-219ENST00000559397 LAMB4A4D0S4 1761 aa21.26■□□□□ 0.99
TPM1-219ENST00000559397 SOS1Q07889 1333 aaPredicted RBP21.26■□□□□ 0.99
TPM1-219ENST00000559397 ITPK1Q13572 414 aa21.25■□□□□ 0.99
TPM1-219ENST00000559397 UPF1Q92900 1129 aaKnown RBP eCLIP21.25■□□□□ 0.99
TPM1-219ENST00000559397 SF3B2Q13435 895 aaKnown RBP21.24■□□□□ 0.99
TPM1-219ENST00000559397 DNAJC10Q8IXB1 793 aa21.24■□□□□ 0.99
TPM1-219ENST00000559397 CCNL1Q9UK58 526 aaPredicted RBP21.24■□□□□ 0.99
TPM1-219ENST00000559397 USP16Q9Y5T5 823 aa21.24■□□□□ 0.99
TPM1-219ENST00000559397 COL5A3P25940 1745 aaPredicted RBP21.24■□□□□ 0.99
TPM1-219ENST00000559397 PLIN1O60240 522 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms