RNA–Protein interactions for RNA: ENST00000498801.5

GARNL3-222, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-222	ENST00000498801	TMEM2	Q9UHN6	1383 aa		10.87	□□□□□ -0.67
GARNL3-222	ENST00000498801	TMEM131L	A2VDJ0	1609 aa		10.87	□□□□□ -0.67
GARNL3-222	ENST00000498801	SPHKAP	Q2M3C7	1700 aa		10.87	□□□□□ -0.67
GARNL3-222	ENST00000498801	STRC	Q7RTU9	1775 aa		10.86	□□□□□ -0.67
GARNL3-222	ENST00000498801	IRF5	Q13568	498 aa		10.86	□□□□□ -0.67
GARNL3-222	ENST00000498801	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.86	□□□□□ -0.67
GARNL3-222	ENST00000498801	EPS8L1	Q8TE68	723 aa		10.86	□□□□□ -0.67
GARNL3-222	ENST00000498801	PLSCR2	Q9NRY7	297 aa		10.86	□□□□□ -0.67
GARNL3-222	ENST00000498801	FMNL1	O95466	1100 aa	Predicted RBP	10.85	□□□□□ -0.67
GARNL3-222	ENST00000498801	HSPA2	P54652	639 aa		10.85	□□□□□ -0.67
GARNL3-222	ENST00000498801	IDI1	Q13907	227 aa		10.85	□□□□□ -0.67
GARNL3-222	ENST00000498801	SCAF11	Q99590	1463 aa	Known RBP	10.85	□□□□□ -0.67
GARNL3-222	ENST00000498801	CLTCL1	P53675	1640 aa		10.84	□□□□□ -0.67
GARNL3-222	ENST00000498801	POM121C	A8CG34	1229 aa		10.83	□□□□□ -0.68
GARNL3-222	ENST00000498801	NR6A1	Q15406	480 aa		10.83	□□□□□ -0.68
GARNL3-222	ENST00000498801	LYPD8	Q6UX82	237 aa		10.83	□□□□□ -0.68
GARNL3-222	ENST00000498801	POLR1A	O95602	1720 aa	Predicted RBP	10.83	□□□□□ -0.68
GARNL3-222	ENST00000498801	COPS2	P61201	443 aa		10.82	□□□□□ -0.68
GARNL3-222	ENST00000498801	MPHOSPH9	Q99550	1183 aa		10.82	□□□□□ -0.68
GARNL3-222	ENST00000498801	SPATA31E1	Q6ZUB1	1445 aa		10.82	□□□□□ -0.68
GARNL3-222	ENST00000498801	POTEG	Q6S5H5	508 aa		10.81	□□□□□ -0.68
GARNL3-222	ENST00000498801	NYAP1	Q6ZVC0	841 aa		10.81	□□□□□ -0.68
GARNL3-222	ENST00000498801	CDAN1	Q8IWY9	1227 aa		10.81	□□□□□ -0.68
GARNL3-222	ENST00000498801	CCDC97	Q96F63	343 aa	Predicted RBP	10.81	□□□□□ -0.68
GARNL3-222	ENST00000498801	NPHP4	O75161	1426 aa	Predicted RBP	10.81	□□□□□ -0.68
GARNL3-222	ENST00000498801	POTEM	A6NI47	508 aa		10.8	□□□□□ -0.68
GARNL3-222	ENST00000498801	JUND	P17535	347 aa		10.8	□□□□□ -0.68
GARNL3-222	ENST00000498801	SERPINA10	Q9UK55	444 aa		10.8	□□□□□ -0.68
GARNL3-222	ENST00000498801	CCDC144A	A2RUR9	1427 aa		10.8	□□□□□ -0.68
GARNL3-222	ENST00000498801	NEXMIF	Q5QGS0	1516 aa		10.79	□□□□□ -0.68
GARNL3-222	ENST00000498801	ANKRD30B	Q9BXX2	1392 aa		10.79	□□□□□ -0.68
GARNL3-222	ENST00000498801	PLEKHG1	Q9ULL1	1385 aa		10.79	□□□□□ -0.68
GARNL3-222	ENST00000498801	WASHC4	Q2M389	1173 aa		10.79	□□□□□ -0.68
GARNL3-222	ENST00000498801	MSS51	Q4VC12	460 aa		10.79	□□□□□ -0.68
GARNL3-222	ENST00000498801	ANKLE2	Q86XL3	938 aa		10.79	□□□□□ -0.68
GARNL3-222	ENST00000498801	GLMN	Q92990	594 aa		10.79	□□□□□ -0.68
GARNL3-222	ENST00000498801	DIP2A	Q14689	1571 aa		10.78	□□□□□ -0.68
GARNL3-222	ENST00000498801	SETBP1	Q9Y6X0	1596 aa		10.78	□□□□□ -0.68
GARNL3-222	ENST00000498801	RIMS2	Q9UQ26	1411 aa		10.78	□□□□□ -0.68
GARNL3-222	ENST00000498801	IQGAP1	P46940	1657 aa		10.78	□□□□□ -0.68
GARNL3-222	ENST00000498801	LTBP4	Q8N2S1	1624 aa		10.77	□□□□□ -0.68
GARNL3-222	ENST00000498801	IQSEC2	Q5JU85	1478 aa		10.77	□□□□□ -0.69
GARNL3-222	ENST00000498801	F12	P00748	615 aa	Predicted RBP	10.77	□□□□□ -0.69
GARNL3-222	ENST00000498801	LTK	P29376	864 aa		10.77	□□□□□ -0.69
GARNL3-222	ENST00000498801	PTPRN	Q16849	979 aa		10.77	□□□□□ -0.69
GARNL3-222	ENST00000498801	SPSB2	Q99619	263 aa		10.77	□□□□□ -0.69
GARNL3-222	ENST00000498801	DHX57	Q6P158	1386 aa	Known RBP	10.77	□□□□□ -0.69
GARNL3-222	ENST00000498801	PRAG1	Q86YV5	1406 aa		10.76	□□□□□ -0.69
GARNL3-222	ENST00000498801	TLL1	O43897	1013 aa		10.76	□□□□□ -0.69
GARNL3-222	ENST00000498801	VAC14	Q08AM6	782 aa		10.76	□□□□□ -0.69
GARNL3-222	ENST00000498801	FAM160A2	Q8N612	972 aa	Predicted RBP	10.76	□□□□□ -0.69
GARNL3-222	ENST00000498801	CALR3	Q96L12	384 aa	Known RBP	10.76	□□□□□ -0.69
GARNL3-222	ENST00000498801	MTR	Q99707	1265 aa		10.76	□□□□□ -0.69
GARNL3-222	ENST00000498801	NWD1	Q149M9	1564 aa		10.76	□□□□□ -0.69
GARNL3-222	ENST00000498801	MYOM2	P54296	1465 aa		10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	NRXN1	Q9ULB1	1477 aa		10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	DXO	O77932	396 aa	Known RBP	10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	PTPN5	P54829	565 aa		10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	PRDM9	Q9NQV7	894 aa		10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	MAP10	Q9P2G4	905 aa		10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	EID1	Q9Y6B2	187 aa		10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	RPGRIP1L	Q68CZ1	1315 aa		10.75	□□□□□ -0.69
GARNL3-222	ENST00000498801	CPS1	P31327	1500 aa		10.74	□□□□□ -0.69
GARNL3-222	ENST00000498801	ZPR1	O75312	459 aa		10.74	□□□□□ -0.69
GARNL3-222	ENST00000498801	PNMA1	Q8ND90	353 aa		10.74	□□□□□ -0.69
GARNL3-222	ENST00000498801	ADAMTS19	Q8TE59	1207 aa		10.74	□□□□□ -0.69
GARNL3-222	ENST00000498801	ADAMTS13	Q76LX8	1427 aa		10.74	□□□□□ -0.69
GARNL3-222	ENST00000498801	CFAP65	Q6ZU64	1925 aa	Known RBP	10.74	□□□□□ -0.69
GARNL3-222	ENST00000498801	NRXN3	Q9Y4C0	1643 aa		10.73	□□□□□ -0.69
GARNL3-222	ENST00000498801	ADH1B	P00325	375 aa		10.73	□□□□□ -0.69
GARNL3-222	ENST00000498801	MMP16	P51512	607 aa		10.73	□□□□□ -0.69
GARNL3-222	ENST00000498801	TXNDC2	Q86VQ3	553 aa		10.73	□□□□□ -0.69
GARNL3-222	ENST00000498801	PIK3R4	Q99570	1358 aa		10.73	□□□□□ -0.69
GARNL3-222	ENST00000498801	NKTR	P30414	1462 aa	Known RBP	10.73	□□□□□ -0.69
GARNL3-222	ENST00000498801	CCNYL3	P0C7X3	344 aa		10.72	□□□□□ -0.69
GARNL3-222	ENST00000498801	NUDT12	Q9BQG2	462 aa		10.72	□□□□□ -0.69
GARNL3-222	ENST00000498801	PIK3C2G	O75747	1445 aa		10.71	□□□□□ -0.69
GARNL3-222	ENST00000498801	CTH	P32929	405 aa		10.71	□□□□□ -0.69
GARNL3-222	ENST00000498801	IFT172	Q9UG01	1749 aa		10.71	□□□□□ -0.69
GARNL3-222	ENST00000498801	FKBPL	Q9UIM3	349 aa		10.71	□□□□□ -0.69
GARNL3-222	ENST00000498801	TJAP1	Q5JTD0	557 aa		10.7	□□□□□ -0.7
GARNL3-222	ENST00000498801	HDGFL1	Q5TGJ6	251 aa		10.7	□□□□□ -0.7
GARNL3-222	ENST00000498801	IL21	Q9HBE4	155 aa		10.7	□□□□□ -0.7
GARNL3-222	ENST00000498801	KIF1B	O60333	1816 aa		10.7	□□□□□ -0.7
GARNL3-222	ENST00000498801	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.69	□□□□□ -0.7
GARNL3-222	ENST00000498801	CCER1	Q8TC90	406 aa	Predicted RBP	10.69	□□□□□ -0.7
GARNL3-222	ENST00000498801	ZNF516	Q92618	1163 aa		10.69	□□□□□ -0.7
GARNL3-222	ENST00000498801	EVA1B	Q9NVM1	165 aa		10.69	□□□□□ -0.7
GARNL3-222	ENST00000498801	TBX22	Q9Y458	520 aa		10.69	□□□□□ -0.7
GARNL3-222	ENST00000498801	PPL	O60437	1756 aa		10.69	□□□□□ -0.7
GARNL3-222	ENST00000498801	MYO5B	Q9ULV0	1848 aa		10.68	□□□□□ -0.7
GARNL3-222	ENST00000498801	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.68	□□□□□ -0.7
GARNL3-222	ENST00000498801	SOX11	P35716	441 aa		10.68	□□□□□ -0.7
GARNL3-222	ENST00000498801	ALG2	Q9H553	416 aa		10.68	□□□□□ -0.7
GARNL3-222	ENST00000498801	SETD1A	O15047	1707 aa	Known RBP	10.67	□□□□□ -0.7
GARNL3-222	ENST00000498801	XRN1	Q8IZH2	1706 aa	Known RBP	10.67	□□□□□ -0.7
GARNL3-222	ENST00000498801	KCNH2	Q12809	1159 aa		10.67	□□□□□ -0.7
GARNL3-222	ENST00000498801	NR1H3	Q13133	447 aa		10.67	□□□□□ -0.7
GARNL3-222	ENST00000498801	PTCH1	Q13635	1447 aa		10.67	□□□□□ -0.7

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