RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PI4KAP2A4QPH2 592 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 TNNT3P45378 269 aaPredicted RBP13.16□□□□□ -0.3
HDAC6-228ENST00000486227 PI4KAP1Q8N8J0 262 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 ARHGAP45Q92619 1136 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 GNL3LQ9NVN8 582 aaKnown RBP13.16□□□□□ -0.3
HDAC6-228ENST00000486227 HMGN5P82970 282 aaKnown RBP13.16□□□□□ -0.3
HDAC6-228ENST00000486227 KRT24Q2M2I5 525 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 MYO5CQ9NQX4 1742 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 MBD3O95983 291 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 MPHOSPH8Q99549 860 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 CYP46A1Q9Y6A2 500 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 TTC37Q6PGP7 1564 aa13.16□□□□□ -0.3
HDAC6-228ENST00000486227 GOLGA6L19H0YKK7 550 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 PDCL3Q9H2J4 239 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 MAP3K19Q56UN5 1328 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 FKBP4Q02790 459 aaKnown RBP eCLIP13.15□□□□□ -0.3
HDAC6-228ENST00000486227 IFNL2Q8IZJ0 200 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 MEIS3Q99687 375 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 RNF123Q5XPI4 1314 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 MRPL50Q8N5N7 158 aaKnown RBP13.15□□□□□ -0.3
HDAC6-228ENST00000486227 LRRC59Q96AG4 307 aaKnown RBP13.15□□□□□ -0.3
HDAC6-228ENST00000486227 EYA1Q99502 592 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 TBC1D2Q9BYX2 928 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 HYPKQ9NX55 129 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 VAMP4O75379 141 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 PRPF40AO75400 957 aaKnown RBP13.15□□□□□ -0.3
HDAC6-228ENST00000486227 TCEAL9Q9UHQ7 104 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 PTPRTO14522 1441 aa13.15□□□□□ -0.3
HDAC6-228ENST00000486227 RAB11FIP3O75154 756 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 FLT4P35916 1363 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 FMNL2Q96PY5 1086 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 C19orf44Q9H6X5 657 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 GLRX3O76003 335 aaKnown RBP13.14□□□□□ -0.31
HDAC6-228ENST00000486227 ZMYND15Q9H091 742 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 BICDL1Q6ZP65 573 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 ZNF652Q9Y2D9 606 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 MAP3K2Q9Y2U5 619 aa13.14□□□□□ -0.31
HDAC6-228ENST00000486227 KDM4AO75164 1064 aa13.13□□□□□ -0.31
HDAC6-228ENST00000486227 ERCC6L2Q5T890 1561 aa13.13□□□□□ -0.31
HDAC6-228ENST00000486227 HDAC1Q13547 482 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-228ENST00000486227 CABLES1Q8TDN4 633 aa13.13□□□□□ -0.31
HDAC6-228ENST00000486227 UPF3BQ9BZI7 483 aaKnown RBP13.13□□□□□ -0.31
HDAC6-228ENST00000486227 BOLA2Q9H3K6 86 aa13.13□□□□□ -0.31
HDAC6-228ENST00000486227 ZPR1O75312 459 aa13.13□□□□□ -0.31
HDAC6-228ENST00000486227 STK3Q13188 491 aa13.13□□□□□ -0.31
HDAC6-228ENST00000486227 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-228ENST00000486227 CCDC8Q9H0W5 538 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-228ENST00000486227 ZFYVE9O95405 1425 aa13.12□□□□□ -0.31
HDAC6-228ENST00000486227 A0A087WZG4 1122 aa13.12□□□□□ -0.31
HDAC6-228ENST00000486227 JAKMIP1Q96N16 626 aaKnown RBP13.12□□□□□ -0.31
HDAC6-228ENST00000486227 NCBP3Q53F19 620 aaKnown RBP13.12□□□□□ -0.31
HDAC6-228ENST00000486227 PPP1R42Q7Z4L9 355 aa13.12□□□□□ -0.31
HDAC6-228ENST00000486227 RNF214Q8ND24 703 aa13.12□□□□□ -0.31
HDAC6-228ENST00000486227 UQCRHLA0A096LP55 91 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 FIBPO43427 364 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 UQCRHP07919 91 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 PDCP20941 246 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 PIK3R4Q99570 1358 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 GCP02774 474 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 SLC39A6Q13433 755 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 C8orf34Q49A92 452 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 BMP2KLQ5H9B9 411 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 RRP12Q5JTH9 1297 aaKnown RBP13.11□□□□□ -0.31
HDAC6-228ENST00000486227 TSHZ3Q63HK5 1081 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 ZBTB3Q9H5J0 574 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 CHPF2Q9P2E5 772 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 ATP5J2-PTCD1G3V325 749 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 BLOC1S2Q6QNY1 142 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 CHD1O14646 1710 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 IL13P35225 146 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 SAFBQ15424 915 aaKnown RBP eCLIP13.11□□□□□ -0.31
HDAC6-228ENST00000486227 CCDC73Q6ZRK6 1079 aa13.11□□□□□ -0.31
HDAC6-228ENST00000486227 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.11□□□□□ -0.314e-7■■■■□ 19.7
HDAC6-228ENST00000486227 LTKP29376 864 aa13.1□□□□□ -0.31
HDAC6-228ENST00000486227 XRCC6P12956 609 aaKnown RBP eCLIP13.1□□□□□ -0.31
HDAC6-228ENST00000486227 TBC1D9Q6ZT07 1266 aa13.1□□□□□ -0.31
HDAC6-228ENST00000486227 NUCB1Q02818 461 aa13.1□□□□□ -0.31
HDAC6-228ENST00000486227 PODXL2Q9NZ53 605 aa13.1□□□□□ -0.31
HDAC6-228ENST00000486227 HOXC9P31274 260 aa13.09□□□□□ -0.31
HDAC6-228ENST00000486227 JARID2Q92833 1246 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-228ENST00000486227 TBC1D32Q96NH3 1257 aa13.09□□□□□ -0.31
HDAC6-228ENST00000486227 TPM3P06753 285 aa13.09□□□□□ -0.31
HDAC6-228ENST00000486227 MTMR7Q9Y216 660 aa13.09□□□□□ -0.31
HDAC6-228ENST00000486227 UGGT1Q9NYU2 1555 aa13.09□□□□□ -0.31
HDAC6-228ENST00000486227 PDRG1Q9NUG6 133 aa13.09□□□□□ -0.31
HDAC6-228ENST00000486227 TRIM35Q9UPQ4 493 aa13.09□□□□□ -0.31
HDAC6-228ENST00000486227 EDC4Q6P2E9 1401 aaKnown RBP13.09□□□□□ -0.31
HDAC6-228ENST00000486227 AKAP4Q5JQC9 854 aa13.08□□□□□ -0.31
HDAC6-228ENST00000486227 TSPY26PQ9H489 355 aa13.08□□□□□ -0.31
HDAC6-228ENST00000486227 PES1O00541 588 aaKnown RBP13.08□□□□□ -0.32
HDAC6-228ENST00000486227 METTL24Q5JXM2 366 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 SASS6Q6UVJ0 657 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 UBE3BQ7Z3V4 1068 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 STK11IPQ8N1F8 1099 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 ANKRD44Q8N8A2 993 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 TMEM2Q9UHN6 1383 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 PLA2R1Q13018 1463 aa13.08□□□□□ -0.32
HDAC6-228ENST00000486227 SNRPA1P09661 255 aaKnown RBP13.08□□□□□ -0.32
HDAC6-228ENST00000486227 SART3Q15020 963 aaKnown RBP13.08□□□□□ -0.32
HDAC6-228ENST00000486227 TPD52L1Q16890 204 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms