RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 CACNA1FO60840 1977 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 RAB11FIP3O75154 756 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 HOXC9P31274 260 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 ANAPC15P60006 121 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 FLIIQ13045 1269 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 MEIS3Q99687 375 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 LRRCC1Q9C099 1032 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 BRPF3Q9ULD4 1205 aa10.86□□□□□ -0.67
HDAC3-202ENST00000459727 ZNF142P52746 1687 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-202ENST00000459727 SDSP20132 328 aa10.85□□□□□ -0.67
HDAC3-202ENST00000459727 HSP90AB4PQ58FF6 505 aa10.85□□□□□ -0.67
HDAC3-202ENST00000459727 TNPO1Q92973 898 aaKnown RBP10.85□□□□□ -0.67
HDAC3-202ENST00000459727 USP26Q9BXU7 913 aa10.85□□□□□ -0.67
HDAC3-202ENST00000459727 PLEKHG2Q9H7P9 1386 aa10.85□□□□□ -0.67
HDAC3-202ENST00000459727 NWD1Q149M9 1564 aa10.85□□□□□ -0.67
HDAC3-202ENST00000459727 FKBP5Q13451 457 aaPredicted RBP10.84□□□□□ -0.67
HDAC3-202ENST00000459727 MED1Q15648 1581 aaPredicted RBP10.84□□□□□ -0.67
HDAC3-202ENST00000459727 CEMIPQ8WUJ3 1361 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 PDE1AP54750 535 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 ATP8B2P98198 1209 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 AMOTQ4VCS5 1084 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 SLC4A10Q6U841 1118 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 ABTB2Q8N961 1025 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 SPRYD3Q8NCJ5 442 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 IP6K1Q92551 441 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 ANP32BQ92688 251 aaKnown RBP10.83□□□□□ -0.68
HDAC3-202ENST00000459727 IL17RAQ96F46 866 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 STAP2Q9UGK3 403 aa10.83□□□□□ -0.68
HDAC3-202ENST00000459727 MARF1Q9Y4F3 1742 aaKnown RBP10.82□□□□□ -0.68
HDAC3-202ENST00000459727 NUTM2FA1L443 756 aa10.82□□□□□ -0.68
HDAC3-202ENST00000459727 UBTFL1P0CB47 393 aaPredicted RBP10.82□□□□□ -0.68
HDAC3-202ENST00000459727 MX1P20591 662 aa10.82□□□□□ -0.68
HDAC3-202ENST00000459727 KLHL40Q2TBA0 621 aa10.82□□□□□ -0.68
HDAC3-202ENST00000459727 ANKLE2Q86XL3 938 aa10.82□□□□□ -0.68
HDAC3-202ENST00000459727 PHF8Q9UPP1 1060 aa10.82□□□□□ -0.68
HDAC3-202ENST00000459727 NFAT5O94916 1531 aa10.82□□□□□ -0.68
HDAC3-202ENST00000459727 KCNA6P17658 529 aa10.81□□□□□ -0.68
HDAC3-202ENST00000459727 KRT24Q2M2I5 525 aa10.81□□□□□ -0.68
HDAC3-202ENST00000459727 HDGFL1Q5TGJ6 251 aa10.81□□□□□ -0.68
HDAC3-202ENST00000459727 GRPEL1Q9HAV7 217 aa10.81□□□□□ -0.68
HDAC3-202ENST00000459727 SALL3Q9BXA9 1300 aa10.81□□□□□ -0.68
HDAC3-202ENST00000459727 SOX12O15370 315 aa10.8□□□□□ -0.68
HDAC3-202ENST00000459727 CEBPAP49715 358 aaPredicted RBP10.8□□□□□ -0.68
HDAC3-202ENST00000459727 HSPA2P54652 639 aa10.8□□□□□ -0.68
HDAC3-202ENST00000459727 PLEKHO1Q53GL0 409 aaPredicted RBP10.8□□□□□ -0.68
HDAC3-202ENST00000459727 KLHL34Q8N239 644 aa10.8□□□□□ -0.68
HDAC3-202ENST00000459727 CHD2O14647 1828 aaKnown RBP10.79□□□□□ -0.68
HDAC3-202ENST00000459727 LMO7Q8WWI1 1683 aa10.79□□□□□ -0.68
HDAC3-202ENST00000459727 FOXO3O43524 673 aa10.79□□□□□ -0.68
HDAC3-202ENST00000459727 AKAP4Q5JQC9 854 aa10.79□□□□□ -0.68
HDAC3-202ENST00000459727 SSH3Q8TE77 659 aa10.79□□□□□ -0.68
HDAC3-202ENST00000459727 INTS4Q96HW7 963 aaKnown RBP10.79□□□□□ -0.68
HDAC3-202ENST00000459727 ESYT1Q9BSJ8 1104 aa10.79□□□□□ -0.68
HDAC3-202ENST00000459727 SLIT3O75094 1523 aa10.79□□□□□ -0.68
HDAC3-202ENST00000459727 RGPD8O14715 1765 aaPredicted RBP10.78□□□□□ -0.68
HDAC3-202ENST00000459727 STRCQ7RTU9 1775 aa10.78□□□□□ -0.68
HDAC3-202ENST00000459727 MST1RQ04912 1400 aa10.78□□□□□ -0.68
HDAC3-202ENST00000459727 BAG4O95429 457 aaKnown RBP10.78□□□□□ -0.68
HDAC3-202ENST00000459727 CYP2E1P05181 493 aaPredicted RBP10.78□□□□□ -0.68
HDAC3-202ENST00000459727 XRCC6P12956 609 aaKnown RBP eCLIP10.78□□□□□ -0.68
HDAC3-202ENST00000459727 PDIA4P13667 645 aaKnown RBP10.78□□□□□ -0.68
HDAC3-202ENST00000459727 ERC1Q8IUD2 1116 aa10.78□□□□□ -0.68
HDAC3-202ENST00000459727 KIF1BPQ96EK5 621 aa10.78□□□□□ -0.68
HDAC3-202ENST00000459727 GPATCH3Q96I76 525 aa10.78□□□□□ -0.68
HDAC3-202ENST00000459727 KIF1AQ12756 1690 aa10.78□□□□□ -0.68
HDAC3-202ENST00000459727 ABCC6O95255 1503 aa10.78□□□□□ -0.68
HDAC3-202ENST00000459727 LTN1O94822 1766 aa10.77□□□□□ -0.68
HDAC3-202ENST00000459727 KDM3BQ7LBC6 1761 aa10.77□□□□□ -0.68
HDAC3-202ENST00000459727 F6X3S4 739 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 ALDH1L1O75891 902 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 MBD3O95983 291 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 TEFQ10587 303 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 POLA2Q14181 598 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 G2E3Q7L622 706 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 C16orf71Q8IYS4 520 aaPredicted RBP10.77□□□□□ -0.69
HDAC3-202ENST00000459727 IL17REQ8NFR9 667 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 TRIM44Q96DX7 344 aaPredicted RBP10.77□□□□□ -0.69
HDAC3-202ENST00000459727 TTC41PQ6P2S7 1318 aa10.77□□□□□ -0.69
HDAC3-202ENST00000459727 CAMTA1Q9Y6Y1 1673 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 CD2BP2O95400 341 aaKnown RBP10.76□□□□□ -0.69
HDAC3-202ENST00000459727 ZNF445P59923 1031 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 PSME1Q06323 249 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 CCDC173Q0VFZ6 552 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 MTX1Q13505 466 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 C1orf141Q5JVX7 400 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 CNTROBQ8N137 903 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 RUFY2Q8WXA3 655 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 SYAP1Q96A49 352 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-202ENST00000459727 GZF1Q9H116 711 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-202ENST00000459727 MIS18AQ9NYP9 233 aa10.76□□□□□ -0.69
HDAC3-202ENST00000459727 DBF4Q9UBU7 674 aaPredicted RBP10.76□□□□□ -0.69
HDAC3-202ENST00000459727 LRRFIP2Q9Y608 721 aaKnown RBP10.76□□□□□ -0.69
HDAC3-202ENST00000459727 DDX49Q9Y6V7 483 aaKnown RBP10.76□□□□□ -0.69
HDAC3-202ENST00000459727 USP42Q9H9J4 1324 aaKnown RBP10.76□□□□□ -0.69
HDAC3-202ENST00000459727 SMARCA5O60264 1052 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-202ENST00000459727 DDX58O95786 925 aaKnown RBP10.75□□□□□ -0.69
HDAC3-202ENST00000459727 CHMLP26374 656 aa10.75□□□□□ -0.69
HDAC3-202ENST00000459727 SSFA2P28290 1259 aa10.75□□□□□ -0.69
HDAC3-202ENST00000459727 EIF4A1P60842 406 aaKnown RBP10.75□□□□□ -0.69
HDAC3-202ENST00000459727 CUL4AQ13619 759 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms