RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CASKIN1Q8WXD9 1431 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 STK25O00506 426 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 PTPRKQ15262 1439 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 C2CD5Q86YS7 1000 aa11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 SEC63Q9UGP8 760 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-202ENST00000381753 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-202ENST00000381753 FOSBP53539 338 aa11.02□□□□□ -0.64
LIMCH1-202ENST00000381753 UTP14AQ9BVJ6 771 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-202ENST00000381753 NBPF3Q9H094 633 aa11.02□□□□□ -0.64
LIMCH1-202ENST00000381753 HFM1A2PYH4 1435 aa11.02□□□□□ -0.64
LIMCH1-202ENST00000381753 APAF1O14727 1248 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 DPP8Q6V1X1 898 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 UBAC1Q9BSL1 405 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 SLC5A4Q9NY91 659 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 ARHGEF10O15013 1369 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 ZNF518AQ6AHZ1 1483 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 SLC4A2P04920 1241 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 TPM3P06753 285 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 DESP17661 470 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 ALDH1B1P30837 517 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 PICALMQ13492 652 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 URB2Q14146 1524 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 NME9Q86XW9 330 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 CCDC69A6NI79 296 aa11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 LARP1Q6PKG0 1096 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-202ENST00000381753 DALRD3Q5D0E6 543 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-202ENST00000381753 CCDC7Q96M83 1385 aa11.01□□□□□ -0.65
LIMCH1-202ENST00000381753 GIGYF1O75420 1035 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-202ENST00000381753 KDM2BQ8NHM5 1336 aa11.01□□□□□ -0.65
LIMCH1-202ENST00000381753 ANKRD20A12PQ8NF67 263 aa11.01□□□□□ -0.65
LIMCH1-202ENST00000381753 PCDH11XQ9BZA7 1347 aa11□□□□□ -0.65
LIMCH1-202ENST00000381753 PCDH11YQ9BZA8 1340 aa11□□□□□ -0.65
LIMCH1-202ENST00000381753 PIBF1Q8WXW3 757 aa11□□□□□ -0.65
LIMCH1-202ENST00000381753 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11□□□□□ -0.65
LIMCH1-202ENST00000381753 DAPK1P53355 1430 aa11□□□□□ -0.65
LIMCH1-202ENST00000381753 DHX29Q7Z478 1369 aaKnown RBP11□□□□□ -0.65
LIMCH1-202ENST00000381753 FGD6Q6ZV73 1430 aa11□□□□□ -0.65
LIMCH1-202ENST00000381753 SYCP1Q15431 976 aa11□□□□□ -0.65
LIMCH1-202ENST00000381753 HOOK1Q9UJC3 728 aaKnown RBP11□□□□□ -0.65
LIMCH1-202ENST00000381753 CIZ1Q9ULV3 898 aaPredicted RBP11□□□□□ -0.65
LIMCH1-202ENST00000381753 MYBBP1AQ9BQG0 1328 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-202ENST00000381753 MINDY4BA8MYZ0 360 aa10.99□□□□□ -0.65
LIMCH1-202ENST00000381753 LIG1P18858 919 aa10.99□□□□□ -0.65
LIMCH1-202ENST00000381753 ATP2B1P20020 1258 aa10.99□□□□□ -0.65
LIMCH1-202ENST00000381753 NINLQ9Y2I6 1382 aa10.99□□□□□ -0.65
LIMCH1-202ENST00000381753 GLRX3O76003 335 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-202ENST00000381753 FAM83GA6ND36 823 aa10.99□□□□□ -0.65
LIMCH1-202ENST00000381753 ZGPATQ8N5A5 531 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 C2orf69Q8N8R5 385 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 ATP10AO60312 1499 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 RPRD2Q5VT52 1461 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 PRIM1P49642 420 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 EN1Q05925 392 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 FAM182BQ5T319 152 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 CKAP2LQ8IYA6 745 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 TPM1P09493 284 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 SNRPA1P09661 255 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 IRX3P78415 501 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 RCAN3Q9UKA8 241 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 ST18O60284 1047 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 MAP3K12Q12852 859 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 UNC5CLQ8IV45 518 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 NLGN1Q8N2Q7 840 aa10.98□□□□□ -0.65
LIMCH1-202ENST00000381753 NCBP1Q09161 790 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 TWISTNBQ3B726 338 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 TRMT1LQ7Z2T5 733 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 ARMC9Q7Z3E5 817 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 MIER1Q8N108 512 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 CNTROBQ8N137 903 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 RNF181Q9P0P0 153 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 KAT6BQ8WYB5 2073 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 TXLNAP40222 546 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 TNNT3P45378 269 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 ORAI2Q96SN7 254 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 KIF21BO75037 1637 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 SSBP05455 408 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 TAF7Q15545 349 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 CNKSR1Q969H4 720 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 A2MP01023 1474 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 CDK13Q14004 1512 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 RUSC2Q8N2Y8 1516 aa10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 PPP1R12BO60237 982 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-202ENST00000381753 SUPT16HQ9Y5B9 1047 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-202ENST00000381753 FAM161AQ3B820 660 aa10.96□□□□□ -0.65
LIMCH1-202ENST00000381753 CWC25Q9NXE8 425 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-202ENST00000381753 UFL1O94874 794 aa10.96□□□□□ -0.66
LIMCH1-202ENST00000381753 TBX22Q9Y458 520 aa10.96□□□□□ -0.66
LIMCH1-202ENST00000381753 ABCA10Q8WWZ4 1543 aa10.96□□□□□ -0.66
LIMCH1-202ENST00000381753 OFD1O75665 1012 aa10.96□□□□□ -0.66
LIMCH1-202ENST00000381753 TMEM94Q12767 1356 aa10.96□□□□□ -0.66
LIMCH1-202ENST00000381753 LDHAL6AQ6ZMR3 332 aa10.96□□□□□ -0.66
LIMCH1-202ENST00000381753 FOXD4L1Q9NU39 408 aa10.96□□□□□ -0.66
LIMCH1-202ENST00000381753 SAMM50Q9Y512 469 aa10.95□□□□□ -0.66
LIMCH1-202ENST00000381753 EFCAB5A4FU69 1503 aa10.95□□□□□ -0.66
LIMCH1-202ENST00000381753 GCP02774 474 aa10.95□□□□□ -0.66
LIMCH1-202ENST00000381753 BIRC2Q13490 618 aa10.95□□□□□ -0.66
LIMCH1-202ENST00000381753 TRIM22Q8IYM9 498 aa10.95□□□□□ -0.66
LIMCH1-202ENST00000381753 MIS18AQ9NYP9 233 aa10.95□□□□□ -0.66
LIMCH1-202ENST00000381753 DDX19BQ9UMR2 479 aa10.95□□□□□ -0.66
LIMCH1-202ENST00000381753 CCDC129Q6ZRS4 1044 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms