RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 SEPT10Q9P0V9 454 aa14.02□□□□□ -0.17
PCF11-201ENST00000298281 PDZRN3Q9UPQ7 1066 aa14.02□□□□□ -0.17
PCF11-201ENST00000298281 ERICH4A6NGS2 130 aa14.02□□□□□ -0.17
PCF11-201ENST00000298281 LARP1BQ659C4 914 aaKnown RBP14.02□□□□□ -0.17
PCF11-201ENST00000298281 CEP131Q9UPN4 1083 aa14.02□□□□□ -0.17
PCF11-201ENST00000298281 SEPT6Q14141 434 aa14.02□□□□□ -0.17
PCF11-201ENST00000298281 CIZ1Q9ULV3 898 aaPredicted RBP14.02□□□□□ -0.17
PCF11-201ENST00000298281 SMTNL1A8MU46 457 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 CEP57L1Q8IYX8 460 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 PPP2R1AP30153 589 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 TMCO3Q6UWJ1 677 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 CEP126Q9P2H0 1117 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 PIP4K2BP78356 416 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 STK3Q13188 491 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 SLC52A1Q9NWF4 448 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 PPP6R1Q9UPN7 881 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 CCDC148Q8NFR7 591 aa14.01□□□□□ -0.17
PCF11-201ENST00000298281 SREK1Q8WXA9 508 aaKnown RBP14.01□□□□□ -0.17
PCF11-201ENST00000298281 PUF60Q9UHX1 559 aaKnown RBP14.01□□□□□ -0.17
PCF11-201ENST00000298281 TMEM132EQ6IEE7 984 aa14□□□□□ -0.17
PCF11-201ENST00000298281 C16orf71Q8IYS4 520 aaPredicted RBP14□□□□□ -0.17
PCF11-201ENST00000298281 NAP1L3Q99457 506 aaPredicted RBP14□□□□□ -0.17
PCF11-201ENST00000298281 K7ELQ4 463 aaPredicted RBP14□□□□□ -0.17
PCF11-201ENST00000298281 NDC80O14777 642 aa14□□□□□ -0.17
PCF11-201ENST00000298281 BIRC2Q13490 618 aa14□□□□□ -0.17
PCF11-201ENST00000298281 CEP135Q66GS9 1140 aa13.99□□□□□ -0.17
PCF11-201ENST00000298281 ZNF530Q6P9A1 599 aaPredicted RBP13.99□□□□□ -0.17
PCF11-201ENST00000298281 SEC63Q9UGP8 760 aaKnown RBP13.99□□□□□ -0.17
PCF11-201ENST00000298281 SYNJ2O15056 1496 aa13.99□□□□□ -0.17
PCF11-201ENST00000298281 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.99□□□□□ -0.17
PCF11-201ENST00000298281 NOB1Q9ULX3 412 aaKnown RBP13.99□□□□□ -0.17
PCF11-201ENST00000298281 TPD52P55327 224 aaPredicted RBP13.99□□□□□ -0.17
PCF11-201ENST00000298281 TOM1L2Q6ZVM7 507 aa13.99□□□□□ -0.17
PCF11-201ENST00000298281 TRMT1LQ7Z2T5 733 aaKnown RBP13.99□□□□□ -0.17
PCF11-201ENST00000298281 KIF21BO75037 1637 aa13.99□□□□□ -0.17
PCF11-201ENST00000298281 TDO2P48775 406 aa13.99□□□□□ -0.17
PCF11-201ENST00000298281 ATF7IPQ6VMQ6 1270 aa13.99□□□□□ -0.17
PCF11-201ENST00000298281 DNA2P51530 1060 aa13.98□□□□□ -0.17
PCF11-201ENST00000298281 RNF187Q5TA31 235 aaPredicted RBP13.98□□□□□ -0.17
PCF11-201ENST00000298281 CRACR2AQ9BSW2 395 aa13.98□□□□□ -0.17
PCF11-201ENST00000298281 KIF2AO00139 706 aaPredicted RBP13.98□□□□□ -0.17
PCF11-201ENST00000298281 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.98□□□□□ -0.17
PCF11-201ENST00000298281 V9GYY5 206 aaPredicted RBP13.98□□□□□ -0.17
PCF11-201ENST00000298281 SULT6B1Q6IMI4 303 aa13.98□□□□□ -0.17
PCF11-201ENST00000298281 SPINK5Q9NQ38 1064 aaPredicted RBP13.98□□□□□ -0.17
PCF11-201ENST00000298281 FGD5Q6ZNL6 1462 aa13.98□□□□□ -0.17
PCF11-201ENST00000298281 SHTN1A0MZ66 631 aa13.98□□□□□ -0.17
PCF11-201ENST00000298281 FSD2A1L4K1 749 aa13.98□□□□□ -0.17
PCF11-201ENST00000298281 CRACR2BQ8N4Y2 399 aaPredicted RBP13.97□□□□□ -0.17
PCF11-201ENST00000298281 PRAM1Q96QH2 718 aa13.97□□□□□ -0.17
PCF11-201ENST00000298281 LRRC9Q6ZRR7 1453 aa13.97□□□□□ -0.17
PCF11-201ENST00000298281 SPATA32Q96LK8 384 aa13.97□□□□□ -0.17
PCF11-201ENST00000298281 C6orf163Q5TEZ5 329 aa13.97□□□□□ -0.17
PCF11-201ENST00000298281 GBP3Q9H0R5 595 aa13.97□□□□□ -0.17
PCF11-201ENST00000298281 IKBKGQ9Y6K9 419 aa13.97□□□□□ -0.17
PCF11-201ENST00000298281 CACNA2D4Q7Z3S7 1137 aa13.97□□□□□ -0.17
PCF11-201ENST00000298281 RBM10P98175 930 aaKnown RBP13.96□□□□□ -0.17
PCF11-201ENST00000298281 IMMTQ16891 758 aaKnown RBP13.96□□□□□ -0.17
PCF11-201ENST00000298281 MAP7D1Q3KQU3 841 aa13.96□□□□□ -0.17
PCF11-201ENST00000298281 CASKIN1Q8WXD9 1431 aa13.96□□□□□ -0.17
PCF11-201ENST00000298281 FKBP4Q02790 459 aaKnown RBP eCLIP13.96□□□□□ -0.17
PCF11-201ENST00000298281 CFAP70Q5T0N1 1121 aa13.96□□□□□ -0.17
PCF11-201ENST00000298281 RPAP2Q8IXW5 612 aaPredicted RBP13.96□□□□□ -0.17
PCF11-201ENST00000298281 LUZP1Q86V48 1076 aa13.96□□□□□ -0.17
PCF11-201ENST00000298281 ATAD2Q6PL18 1390 aa13.96□□□□□ -0.18
PCF11-201ENST00000298281 IGHMBP2P38935 993 aaKnown RBP13.96□□□□□ -0.18
PCF11-201ENST00000298281 SPA17Q15506 151 aa13.96□□□□□ -0.18
PCF11-201ENST00000298281 TAOK3Q9H2K8 898 aa13.96□□□□□ -0.18
PCF11-201ENST00000298281 NUP62CLQ9H1M0 184 aa13.96□□□□□ -0.18
PCF11-201ENST00000298281 CCDC196A0A1B0GTZ2 297 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 SPECC1Q5M775 1068 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 UPF3BQ9BZI7 483 aaKnown RBP13.95□□□□□ -0.18
PCF11-201ENST00000298281 AACSQ86V21 672 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 PDCL2Q8N4E4 241 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 VPS36Q86VN1 386 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 SMC1BQ8NDV3 1235 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 ZNF652Q9Y2D9 606 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 MXRA7P84157 204 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 MVPQ14764 893 aaKnown RBP13.95□□□□□ -0.18
PCF11-201ENST00000298281 TSG101Q99816 390 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 PDRG1Q9NUG6 133 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 AKAP2Q9Y2D5 859 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 RPGRIP1LQ68CZ1 1315 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 TMCO4Q5TGY1 634 aa13.95□□□□□ -0.18
PCF11-201ENST00000298281 U3KPZ7 1027 aaPredicted RBP13.95□□□□□ -0.18
PCF11-201ENST00000298281 SRGAP3O43295 1099 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 LRP2BPQ9P2M1 347 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 NCOA2Q15596 1464 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 STARD3NLO95772 234 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 CHD1LQ86WJ1 897 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 TAF12Q16514 161 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 SYNCQ9H7C4 482 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 IGF1RP08069 1367 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 SNX16P57768 344 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 FGFR1OPO95684 399 aaKnown RBP13.94□□□□□ -0.18
PCF11-201ENST00000298281 CDK19Q9BWU1 502 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 SIL1Q9H173 461 aa13.94□□□□□ -0.18
PCF11-201ENST00000298281 BICDL1Q6ZP65 573 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 PHAXQ9H814 394 aaKnown RBP13.93□□□□□ -0.18
PCF11-201ENST00000298281 ARHGAP29Q52LW3 1261 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms