RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Hook3Q8BUK6 718 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 ImpactO55091 318 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ddx10Q80Y44 875 aaKnown RBP13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 TkfcQ8VC30 578 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Hsf2bpQ9D4G2 338 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Sept6Q9R1T4 434 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Lman1Q9D0F3 517 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Iffo1Q8BXL9 562 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Sept7O55131 436 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Shtn1Q8K2Q9 631 aa13.82□□□□□ -0.2
Trim56-201ENSMUST00000054384 Zeb2Q9R0G7 1215 aa13.81□□□□□ -0.2
Trim56-201ENSMUST00000054384 Stx1aO35526 288 aa13.81□□□□□ -0.2
Trim56-201ENSMUST00000054384 Psmd1Q3TXS7 953 aa13.81□□□□□ -0.2
Trim56-201ENSMUST00000054384 RalylQ8BTF8 293 aa13.81□□□□□ -0.2
Trim56-201ENSMUST00000054384 Znf287Q9EQB9 759 aa13.81□□□□□ -0.2
Trim56-201ENSMUST00000054384 Rab3il1Q8VDV3 383 aa13.81□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ercc3P49135 783 aa13.81□□□□□ -0.2
Trim56-201ENSMUST00000054384 Paxbp1P58501 919 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ccdc93Q7TQK5 629 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Prdm16A2A935 1275 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Fchsd2Q3USJ8 740 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Pabpn1Q8CCS6 302 aaKnown RBP13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Fermt2Q8CIB5 680 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Evi5lH3BKQ3 813 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ddx19aQ61655 478 aaKnown RBP13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Tfip11Q9ERA6 838 aaKnown RBP13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Smco2Q9DA21 347 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Rcan3Q9JKK0 239 aa13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 IbtkQ6ZPR6 1352 aaKnown RBP13.8□□□□□ -0.2
Trim56-201ENSMUST00000054384 Tnni2P13412 182 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ppip5k2Q6ZQB6 1129 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Efcab5A0JP43 1406 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Sdccag8Q80UF4 717 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Cdk19Q8BWD8 501 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Tmc2Q8R4P4 888 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ankrd1Q9CR42 319 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Akap2O54931 893 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 GlmnQ8BZM1 596 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Cul5Q9D5V5 780 aa13.79□□□□□ -0.2
Trim56-201ENSMUST00000054384 Rad23bP54728 416 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Rrs1Q9CYH6 365 aaKnown RBP13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Larp1bA0A0A6YXJ7 370 aaKnown RBP13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Tmco5aQ9D9D5 303 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Nlrp3Q8R4B8 1033 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Pde4cQ3UEI1 686 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 PalmQ9Z0P4 383 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Vps37cQ8R105 352 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Kcnn1Q9EQR3 537 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 NapbP28663 298 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 4930572O03RikQ8C5Y0 211 aa13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Noc2lQ9WV70 747 aaKnown RBP13.78□□□□□ -0.2
Trim56-201ENSMUST00000054384 Gjb2Q00977 226 aa13.77□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ggnbp2Q5SV77 696 aa13.77□□□□□ -0.2
Trim56-201ENSMUST00000054384 Sos1Q62245 1319 aa13.77□□□□□ -0.2
Trim56-201ENSMUST00000054384 Gbp1Q01514 589 aa13.77□□□□□ -0.2
Trim56-201ENSMUST00000054384 Cep120Q7TSG1 988 aa13.77□□□□□ -0.21
Trim56-201ENSMUST00000054384 Rnf216P58283 853 aa13.77□□□□□ -0.21
Trim56-201ENSMUST00000054384 Gigyf2Q6Y7W8 1291 aaKnown RBP13.77□□□□□ -0.21
Trim56-201ENSMUST00000054384 Matr3Q8K310 846 aaKnown RBP13.77□□□□□ -0.21
Trim56-201ENSMUST00000054384 Pdcl2Q78Y63 240 aa13.77□□□□□ -0.21
Trim56-201ENSMUST00000054384 Snw1Q9CSN1 536 aaKnown RBP13.77□□□□□ -0.21
Trim56-201ENSMUST00000054384 Dact3Q0PHV7 610 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Paip2Q9D6V8 124 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Nphp3Q7TNH6 1325 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Serpina10Q8R121 448 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Vps36Q91XD6 386 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Cdca7Q9D0M2 382 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Slc26a8Q8R0C3 999 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ctage5Q8R311 779 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ccdc150Q8CDI7 1110 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Slc4a2P13808 1237 aaKnown RBP13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Asxl1P59598 1514 aa13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Maco1Q7TQE6 664 aaKnown RBP13.76□□□□□ -0.21
Trim56-201ENSMUST00000054384 Zfp853A0A1D5RM95 733 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ddx54Q8K4L0 874 aaKnown RBP13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Bms1Q6PGF5 1284 aaKnown RBP13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Cdan1Q8CC12 1239 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Mcm3P25206 812 aaKnown RBP13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Igbp1bQ9QZ29 343 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Mybbp1aQ7TPV4 1344 aaKnown RBP13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Smarcc1P97496 1104 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Gbp8Q2V6D6 525 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Mum1Q6DID5 682 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Arhgef5E9Q7D5 1581 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Cnga2Q62398 664 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ano2Q8CFW1 1002 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 SfswapQ3USH5 945 aaKnown RBP13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Clul1Q3ZRW6 464 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Cep135Q6P5D4 1140 aa13.75□□□□□ -0.21
Trim56-201ENSMUST00000054384 Hdhd2Q3UGR5 259 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ttc5Q99LG4 440 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Wdhd1P59328 1117 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Rai14Q9EP71 979 aaKnown RBP13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 TchpQ3TVW5 497 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ccdc42Q5SV66 316 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Ankib1Q6ZPS6 1085 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 NgdnQ9DB96 315 aaKnown RBP13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Tiam1Q60610 1591 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Jph4Q80WT0 628 aa13.74□□□□□ -0.21
Trim56-201ENSMUST00000054384 Atad2bE9Q166 1460 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 22,080 RNA–protein pairs in 30.9 ms