Protein–RNA interactions for Protein: P31276

HOXC13, Homeobox protein Hox-C13, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC13P31276 RNU2-34P-201ENST00000516534 121 ntBASIC1.82□□□□□ -2.12
HOXC13P31276 AP002001.1-203ENST00000534002 267 ntBASIC1.82□□□□□ -2.12
HOXC13P31276 AL359881.1-201ENST00000602916 267 ntBASIC1.82□□□□□ -2.12
HOXC13P31276 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.82□□□□□ -2.12
HOXC13P31276 AC022513.1-201ENST00000624512 117 ntBASIC1.82□□□□□ -2.12
HOXC13P31276 Y_RNA.75-201ENST00000362927 97 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU6-324P-201ENST00000363957 106 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU4-10P-201ENST00000364383 140 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNA5SP205-201ENST00000364653 136 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 SNORD48-201ENST00000364953 64 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU6-215P-201ENST00000365169 102 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU4-11P-201ENST00000365287 132 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 SNORA40-201ENST00000388090 126 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU6-763P-201ENST00000390865 106 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU6-239P-201ENST00000390990 99 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 ELOCP21-201ENST00000412558 336 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 AL035461.1-201ENST00000421490 332 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU6-1211P-201ENST00000459179 105 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU7-95P-201ENST00000459222 64 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 AC091179.3-201ENST00000474761 144 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RPL36AP21-201ENST00000490372 323 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RN7SL274P-201ENST00000492268 272 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU6-1333P-201ENST00000516162 93 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 RNU6-1234P-201ENST00000516877 103 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXC13P31276 MIR4419B-201ENST00000577260 68 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 MIR548X2-201ENST00000579776 100 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 AL645939.4-201ENST00000604495 135 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 BX248123.2-201ENST00000606318 124 ntBASIC1.81□□□□□ -2.12
HOXC13P31276 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXC13P31276 Y_RNA.71-201ENST00000362892 104 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 Y_RNA.121-201ENST00000363309 113 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 Y_RNA.218-201ENST00000364218 104 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 RNU6-793P-201ENST00000384233 104 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 Y_RNA.572-201ENST00000384757 98 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 MIR499A-201ENST00000384903 122 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 RNU2-54P-201ENST00000410299 190 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 RNA5SP475-201ENST00000410568 110 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 MTND4LP9-201ENST00000427694 174 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 RNU6-1041P-201ENST00000516254 102 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 RNU6-107P-201ENST00000516643 102 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXC13P31276 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXC13P31276 MIR3658-201ENST00000636291 56 ntBASIC1.8□□□□□ -2.12
HOXC13P31276 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
HOXC13P31276 AC134026.1-201ENST00000623249 2239 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 AC068700.1-201ENST00000565862 3754 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
HOXC13P31276 RNU6-862P-201ENST00000362804 105 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 RNU6-1048P-201ENST00000364054 107 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 RNU6-1305P-201ENST00000364353 104 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 RNU6-275P-201ENST00000364910 107 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.79□□□□□ -2.12
HOXC13P31276 Y_RNA.542-201ENST00000384641 111 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 MIR1267-201ENST00000408723 78 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.79□□□□□ -2.12
HOXC13P31276 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXC13P31276 RNU6-436P-201ENST00000516171 114 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 SNORA31.17-201ENST00000516953 127 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 RNU6-856P-201ENST00000516959 98 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXC13P31276 MIR3674-201ENST00000636576 68 ntBASIC1.79□□□□□ -2.12
HOXC13P31276 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
HOXC13P31276 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
HOXC13P31276 Y_RNA.127-201ENST00000363386 109 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-112P-201ENST00000363599 104 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-801P-201ENST00000364087 105 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 snoU2_19.4-201ENST00000364329 80 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 Y_RNA.273-201ENST00000364703 102 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-1325P-201ENST00000364905 105 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 Y_RNA.293-201ENST00000364908 93 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 Y_RNA.415-201ENST00000384012 112 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-1310P-201ENST00000384153 107 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-975P-201ENST00000384296 105 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-578P-201ENST00000390980 103 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-381P-201ENST00000391259 108 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 MIR513C-201ENST00000401352 84 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RPL30P13-201ENST00000418873 348 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 AC245517.4-201ENST00000448601 281 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 Y_RNA.686-201ENST00000516548 134 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU7-121P-201ENST00000516604 62 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-919P-201ENST00000516731 104 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 RNU6-453P-201ENST00000516819 85 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 CYCSP23-201ENST00000519781 313 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 AC100767.1-201ENST00000528178 123 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 MIR3122-201ENST00000577243 73 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 MIR3618-201ENST00000580330 88 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 MIR4744-201ENST00000581563 82 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 AC006380.1-201ENST00000603598 186 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.78□□□□□ -2.12
HOXC13P31276 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
HOXC13P31276 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
HOXC13P31276 Y_RNA.24-201ENST00000362508 103 ntBASIC1.77□□□□□ -2.13
HOXC13P31276 SNORD33-201ENST00000362761 85 ntBASIC1.77□□□□□ -2.13
HOXC13P31276 RNU6-199P-201ENST00000362954 107 ntBASIC1.77□□□□□ -2.13
HOXC13P31276 RNU5F-3P-201ENST00000363767 117 ntBASIC1.77□□□□□ -2.13
HOXC13P31276 RNU1-96P-201ENST00000364163 162 ntBASIC1.77□□□□□ -2.13
HOXC13P31276 RNU6-454P-201ENST00000364292 107 ntBASIC1.77□□□□□ -2.13
HOXC13P31276 RNU6-153P-201ENST00000364422 104 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 249.4 ms